ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MCM3A_HUMAN (O60318) 80 kda MCM3-associated protein (GANP protein) 28 8.3

>MCM3A_HUMAN (O60318) 80 kda MCM3-associated protein (GANP protein)|
          Length = 1980

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 235  GPGPMWMIILKDRNVFLCTIHKKKNFRSP--PVTSLAFPDSG 116
            G GP  M I  D  + LC  HK +++  P  PVTS A  + G
Sbjct: 1731 GAGPSVMEIPWDDLIALCINHKLRDWTPPRLPVTSEALSEDG 1772


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,754,929
Number of Sequences: 219361
Number of extensions: 652199
Number of successful extensions: 1404
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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