ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT_PARLI (P80367) Metallothionein (MT) 32 0.61
2SODM2_HALME (O08460) Superoxide dismutase [Mn] 2 (EC 1.15.1.1) (... 29 3.9
3PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1 29 3.9
4SHBG_MOUSE (P97497) Sex hormone-binding globulin precursor (SHBG... 29 5.2
5KUP_VIBCH (Q9KM59) Probable potassium transport system protein kup 29 5.2
6SHBG_PHOSU (Q62588) Sex hormone-binding globulin precursor (SHBG... 29 5.2
7NIA1_ORYSA (P16081) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) 28 6.7
8VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor... 28 6.7
9PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3 28 6.7
10SHBG_RABIT (P15196) Sex hormone-binding globulin precursor (SHBG... 28 8.8
11PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2 28 8.8

>MT_PARLI (P80367) Metallothionein (MT)|
          Length = 65

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 391 PPASQTCMAFGQVLQIGASGCLFTCSAAAC-CT 296
           P A Q C   G+  + GAS C  TCS AAC CT
Sbjct: 15  PCAGQECCITGKCCKDGASVCCGTCSNAACKCT 47



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>SODM2_HALME (O08460) Superoxide dismutase [Mn] 2 (EC 1.15.1.1) (Fragment)|
          Length = 146

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 279 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWE 383
           L+Y+   +Q   L V KH D  +W   P  A+ VWE
Sbjct: 94  LVYDPVTKQLRNLAVQKHNDGALWSAHPILALDVWE 129



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>PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1|
          Length = 1468

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 247  NPFHHFS*SVDCCPIWWAWNCTCCSSDFTVF 155
            N F  F  S    P+WW W C  C   +T++
Sbjct: 1373 NLFTGFVISRPATPVWWRWYCWICPVAWTLY 1403



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>SHBG_MOUSE (P97497) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 403

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 82  NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMPTIWGNNLQTS 228
           +S A FC   FW +G R++    + R  + W + C   P+   N+ +TS
Sbjct: 357 SSSASFCLSDFWVQGQRLDIDQALSRSQDIWTHSCPQRPS---NDTRTS 402



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>KUP_VIBCH (Q9KM59) Probable potassium transport system protein kup|
          Length = 620

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
 Frame = -3

Query: 387 LLPKHA-WHSAKFSRLAHPGAYLHAVLLPAVRTLRKLGLSSEEENKLIIHFTISASL*IV 211
           LL  HA WH+ +  R  +P   +H VLL    TL  LGL         +  +++    + 
Sbjct: 181 LLGAHAIWHAPQVLRALNPAYAVHFVLLYGQHTLFILGL---------VVLSVTGVEALY 231

Query: 210 APYGGHGI--------AHVVPVILLSLYPKSRFNSSSLVPKGT 106
           A  G  GI        A V+P +LL+ + +  +  +   P G+
Sbjct: 232 ADMGHFGIKPIRIAWFALVMPSLLLNYFGQGAYLLTLSAPTGS 274



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>SHBG_PHOSU (Q62588) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 399

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 82  NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMP 198
           NS A FC    W +G R++    + R  N W + C   P
Sbjct: 353 NSSASFCLSDLWVQGQRLDIDQALNRSQNIWTHSCPHSP 391



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>NIA1_ORYSA (P16081) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)|
          Length = 916

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 264 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTW 359
           PP+  L++ G++  AA  +V  H   P   W TW
Sbjct: 125 PPLAELMHHGFITPAALHYVANHGAVPRGDWSTW 158



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>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor|
           (EC 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase
           receptor FLT4)
          Length = 1363

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 264 PPMTNLIYEGYVQQAA-ALHVNKHPDAPIWRTWPNAMHVWEAGGRN 398
           PP  N+  + YV     +L ++     P+  TWP A  V   GG++
Sbjct: 29  PPTLNITEDSYVIDTGDSLSISCRGQHPLEWTWPGAQEVLTTGGKD 74



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>PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3|
          Length = 1457

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 208  PIWWAWNCTCCSSDFTVF 155
            PIWW W C  C   +T++
Sbjct: 1375 PIWWRWYCWACPVAWTLY 1392



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>SHBG_RABIT (P15196) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 398

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 82  NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMPTIWGNNLQTS 228
           +S A FC    W +G +++    + R  + W + C S P   GN   TS
Sbjct: 352 DSSASFCLDGLWAQGQKLDMDKALNRSQDIWTHSCPSSP---GNGTDTS 397



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>PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2|
          Length = 1464

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 208  PIWWAWNCTCCSSDFTVF 155
            PIWW W C  C   +T++
Sbjct: 1382 PIWWRWYCWICPVAWTLY 1399


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,804,149
Number of Sequences: 219361
Number of extensions: 1370311
Number of successful extensions: 3700
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3700
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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