ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45h07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 73.2 bits (178), Expect = 2e-13 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI Sbjct: 867 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 65.5 bits (158), Expect = 3e-11 Identities = 27/33 (81%), Positives = 32/33 (96%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +NRCGAGVLPYEL+APSS PG+TCRGVPNS++I Sbjct: 886 KNRCGAGVLPYELLAPSSPPGVTCRGVPNSISI 918
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 54.7 bits (130), Expect = 6e-08 Identities = 21/33 (63%), Positives = 29/33 (87%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +NRCGAG++PYEL+ P S PG+T RG+PNS++I Sbjct: 864 KNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 49.7 bits (117), Expect = 2e-06 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +NRCGAG+LPY+LM P S G+T G+PNS +I Sbjct: 909 KNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 49.7 bits (117), Expect = 2e-06 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +NRCGAG+LPY+LM P S G+T G+PNS +I Sbjct: 892 KNRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 45.8 bits (107), Expect = 3e-05 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 RNRCG +PY L+ PSS G+T RG+PNS++I Sbjct: 825 RNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 45.4 bits (106), Expect = 4e-05 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 RNR G +PY L+ PSS G+TCRG+PNS++I Sbjct: 834 RNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 RNR G +PY L+ PSS G+T RG+PNS++I Sbjct: 821 RNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 41.2 bits (95), Expect = 7e-04 Identities = 18/33 (54%), Positives = 25/33 (75%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +NR GAGV+ YEL+ P+S G+T GVP S++I Sbjct: 864 KNRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 40.8 bits (94), Expect = 9e-04 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 RNR G +PY L+ PSS G+T RG+PNS++I Sbjct: 829 RNRHGPVEMPYTLLYPSSKEGLTFRGIPNSISI 861
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/32 (56%), Positives = 23/32 (71%) Frame = -3 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G LPY L+ PSS G+T RG+PNS++I Sbjct: 808 NRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +NR G +PY L+ PSS G+T RG+PNSV+I Sbjct: 827 KNRTGLVKMPYTLLFPSSEGGVTGRGIPNSVSI 859
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -3 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G LPY L+ P+S G+TCRG+PNS++I Sbjct: 835 NRLGPVQLPYTLLHPNS-EGLTCRGIPNSISI 865
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = -3 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +R G LPY L+ PSS G+T RG+PNS++I Sbjct: 833 HRVGPVQLPYTLLHPSSKEGLTFRGIPNSISI 864
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 37.7 bits (86), Expect = 0.008 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 RNR G LPY L+ SS G+T +G+PNS++I Sbjct: 832 RNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 37.4 bits (85), Expect = 0.010 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +NR G +PY L+ P+S G+T +G+PNSV+I Sbjct: 827 KNRSGPVNVPYTLLFPTSEEGLTGKGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 35.4 bits (80), Expect = 0.037 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -3 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G PY L+ P+S G+T +G+PNSV+I Sbjct: 829 NRTGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 860
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 35.4 bits (80), Expect = 0.037 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -3 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G PY L+ P+S G+T +G+PNSV+I Sbjct: 830 NRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 861
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 35.0 bits (79), Expect = 0.049 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 +NR G PY LM P++ GIT RG+PNS++I Sbjct: 825 KNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 35.0 bits (79), Expect = 0.049 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 5/38 (13%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCR-----GVPNSVTI 194 RNR GAGV+PY L+ P +G + + G+PNS++I Sbjct: 895 RNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 33.1 bits (74), Expect = 0.19 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPGITCRGV 212 RNR G +PY L+ PSS G+T RG+ Sbjct: 715 RNRTGPAKMPYTLLYPSSEEGLTFRGI 741
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 33.1 bits (74), Expect = 0.19 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPS-SGPGITCRGVPNSVTI 194 RNR G +PY ++ P+ G+T RG+PNS++I Sbjct: 829 RNRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 32.0 bits (71), Expect = 0.41 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 +NR G PY L+ P++ GIT +G+PNS++I Sbjct: 828 KNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 31.6 bits (70), Expect = 0.54 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 7/40 (17%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSS-------GPGITCRGVPNSVTI 194 +NR G +PY L+ P++ G G+T G+PNS++I Sbjct: 838 KNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 31.2 bits (69), Expect = 0.70 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 10/43 (23%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGPG----------ITCRGVPNSVTI 194 +NR GAG++PY L+ PS G + G+PNS++I Sbjct: 894 KNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 31.2 bits (69), Expect = 0.70 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 6/39 (15%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 +NR G PY L+ P++ G+T +G+PNS++I Sbjct: 824 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 30.8 bits (68), Expect = 0.92 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 6/39 (15%) Frame = -3 Query: 292 RNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 +NR G PY L+ P++ G++ RG+PNS++I Sbjct: 832 KNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>Y1013_HAEIN (Q57151) Hypothetical protein HI1013| Length = 258 Score = 30.8 bits (68), Expect = 0.92 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +2 Query: 44 NQWRFGLRGEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQFTLCGLDGDAVRDASA 223 N+ F R E + F Y+ L+P +PAQ + + + HG GD + Sbjct: 13 NEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFNTPAGDVNKGEWG 72 Query: 224 GDARPGR 244 G A PGR Sbjct: 73 GSAIPGR 79
>ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase| 2) Length = 495 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 119 ETFPAQSISRLKNSHGPLQFTLCGLD 196 ETFP SIS K + G + T+C +D Sbjct: 395 ETFPQISISASKQAEGDINITICNID 420
>PARE_HAEIN (P43703) DNA topoisomerase 4 subunit B (EC 5.99.1.-) (Topoisomerase| IV subunit B) Length = 632 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 Query: 127 PGPKYIEAEKFPRSASIHSLRARW*RCSG 213 P PKY ++ KF S H LRA+ CSG Sbjct: 169 PNPKYFDSAKFSVSRLRHLLRAKAVLCSG 197
>BGAL_PSEHA (P81650) Beta-galactosidase (EC 3.2.1.23) (Lactase)| (Beta-D-galactoside galactohydrolase) Length = 1038 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +2 Query: 38 GPNQWRFGLR-GEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQFTL 184 G + W +G G+ N +F +LFP+ P S+ K S LQFTL Sbjct: 580 GKHYWAYGGDFGDELNDRQFCINGLLFPDRTPHPSLFEAKYSQQHLQFTL 629
>BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1034 Score = 28.5 bits (62), Expect = 4.6 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +2 Query: 50 WRFGLR-GEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQFTLCGLDGDAVRDASAG 226 W +G G+ PN +F ++FP+ P S+ K++ QFTL VR S Sbjct: 593 WAYGGDFGDKPNDRQFCMNGLVFPDRTPHPSLVEAKHAQQYFQFTLLSTSPLRVRIISEY 652 Query: 227 DARP 238 RP Sbjct: 653 LFRP 656
>C71A9_SOYBN (O81970) Cytochrome P450 71A9 (EC 1.14.-.-) (P450 CP1)| Length = 499 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +2 Query: 122 TFPAQSISRLKNSHGPLQFTLCG 190 T P QS+ L N HGPL F G Sbjct: 51 TLPHQSLQYLSNKHGPLMFLQLG 73
>DHX34_HUMAN (Q14147) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)| (DEAH box protein 34) Length = 576 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 291 ATAVAPACCRTSSWRRRPGRASPAEASRT 205 ++ AP CC SW RP A+ AE +RT Sbjct: 549 SSLAAPRCCTHRSW--RPATATEAETTRT 575
>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B| Length = 257 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 291 ATAVAPACCRTSSWRRRPGRASPAEASRTASP 196 +T+ AP+ RT P RA+P +RTASP Sbjct: 157 STSTAPSPSRTLPSSSSPSRATPQLPTRTASP 188
>PRIA_RHORU (P05445) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 811 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +2 Query: 152 KNSHGPLQFTLCGL-DGDAVRDASAGDARPGRRRHELVRQHAG 277 K H PL TL G+ DGD + GD R R H+L+ Q AG Sbjct: 629 KGHHFPL-ITLVGVVDGDL--GLTGGDLRASERTHQLLHQVAG 668
>PCP1_YEAST (P53259) Rhomboid protein 1, mitochondrial precursor (EC| 3.4.21.105) (Processing of cytochrome c peroxidase protein 1) (Mitochondrial distribution and morphology protein 37) Length = 346 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/60 (28%), Positives = 30/60 (50%) Frame = +2 Query: 17 N*IFSYLGPNQWRFGLRGEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPLQFTLCGLD 196 N +++ LG N FGL + P WRF Y+L + + IS + ++ +F G++ Sbjct: 144 NLVYALLGINVAVFGL-WQLPKCWRFLQKYMLLQKDYVTSKISIIGSAFSHQEFWHLGMN 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,812,692 Number of Sequences: 219361 Number of extensions: 993809 Number of successful extensions: 3072 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3068 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
