ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWF19_SCHPO (Q09909) Cell cycle control protein cwf19 33 0.21
2SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Se... 30 2.4
3CAUP_DROME (P54269) Homeobox protein caupolican 29 5.3

>CWF19_SCHPO (Q09909) Cell cycle control protein cwf19|
          Length = 639

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 322 NQTGCETFHPGTENHHHSRHGNPGHPCHFGTHRP 423
           N+T  ET H     HHHSRH    H  H  + RP
Sbjct: 16  NETDRETNHSRRHRHHHSRHRESKHGRHDRSERP 49



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>SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Selenoprotein|
           Se-P10; Selenoprotein Se-P6; Selenoprotein Se-P2;
           Selenoprotein Se-P1]
          Length = 385

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 328 TGCETFHPGTENHHHSRHGNPGHPCHFGTHRP 423
           T  +T  P  E++HH  H   GH  H G+ +P
Sbjct: 193 TASKTTEPSEEHNHHKHHDKHGHE-HLGSSKP 223



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>CAUP_DROME (P54269) Homeobox protein caupolican|
          Length = 693

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/55 (25%), Positives = 20/55 (36%)
 Frame = +1

Query: 250 YQTSNFYRACLGSPCVHCHPL*TRNQTGCETFHPGTENHHHSRHGNPGHPCHFGT 414
           Y   NFY        +   PL    Q   +      ++HHH  H +P H    G+
Sbjct: 480 YLGQNFYPPSSADQQLPHQPLQQHQQQQLQQLQQQQQHHHHPHHHHPHHSMELGS 534


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,855,298
Number of Sequences: 219361
Number of extensions: 1060346
Number of successful extensions: 3195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3171
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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