ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483368.1| Oryza sativa (japonica cultivar-group), mRNA 117 3e-23
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
3dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
4dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
5dbj|AK059543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
6dbj|AB071297.1| Oryza sativa OsARF7b mRNA for auxin response fac... 117 3e-23
7ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10gb|AY105182.1| Zea mays PCO117620 mRNA sequence 48 0.025
11ref|XM_679330.1| PREDICTED: Danio rerio similar to nicotinic ace... 44 0.39
12gb|AC154353.1| Mus musculus BAC clone RP24-547N14 from chromosom... 44 0.39
13emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in l... 44 0.39
14gb|AC131316.8| Mus musculus chromosome 1, clone RP23-302H1, comp... 42 1.5
15gb|AC016732.7| Homo sapiens BAC clone RP11-389E16 from 2, comple... 42 1.5
16emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-7... 42 1.5
17ref|NM_126926.3| Arabidopsis thaliana ATP binding / ATP-dependen... 40 6.0
18ref|XM_519499.1| PREDICTED: Pan troglodytes similar to DKFZP586J... 40 6.0
19gb|AC093029.4| Homo sapiens chromosome X clone XX-16186 map p11.... 40 6.0
20gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p... 40 6.0
21gb|AC148942.1| Pan troglodytes chromosome X clone RP43-025L12 ma... 40 6.0
22emb|AJ459965.1|ECA459965 Equus caballus CRISP3 gene for cysteine... 40 6.0
23gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
24gb|AY358482.1| Homo sapiens clone DNA77631 HILV1821 (UNQ1821) mR... 40 6.0
25gb|U58749.1| Caenorhabditis elegans cosmid B0496, complete sequence 40 6.0
26emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 o... 40 6.0
27emb|Z54354.1|SPAC2G11 S.pombe chromosome I cosmid c2G11 40 6.0
28gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 6.0
29gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete se... 40 6.0
30gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, com... 40 6.0
31dbj|AK128368.1| Homo sapiens cDNA FLJ46511 fis, clone THYMU3031868 40 6.0
32gb|AC102953.5| Homo sapiens BAC clone RP11-1246C19 from 7, compl... 40 6.0
33gb|AC007209.6| Arabidopsis thaliana chromosome 2 clone F14O4 map... 40 6.0
34ref|XM_935548.1| PREDICTED: Homo sapiens integrator complex subu... 40 6.0
35ref|XM_942544.1| PREDICTED: Homo sapiens integrator complex subu... 40 6.0
36ref|XM_291222.6| PREDICTED: Homo sapiens integrator complex subu... 40 6.0
37dbj|AK221299.1| Arabidopsis thaliana mRNA for pseudogene, partia... 40 6.0
38gb|AC159251.2| Mus musculus BAC clone RP24-113B8 from chromosome... 40 6.0
39tpg|BK005720.1| TPA: TPA_exp: Homo sapiens integrator complex su... 40 6.0
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
42gb|AF053982.1|AF053982 Pseudomonas aeruginosa putative molybdote... 40 6.0
43gb|AE004728.1| Pseudomonas aeruginosa PAO1, section 289 of 529 o... 40 6.0
44dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
45dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
46dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
47gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
48gb|BC004286.1| Homo sapiens integrator complex subunit 1, mRNA (... 40 6.0
49dbj|AB037861.1| Homo sapiens mRNA for KIAA1440 protein, partial cds 40 6.0 
>ref|XM_483368.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3342

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                        
Query: 363  tgacccccatctgagctgctgcaagcttggttgggtagaaagccgtcgccaaagtcacca 422
            ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || 
Sbjct: 3317 tgacccccatcagagctgctgcaagcttggttgggtagaaagctgtctccaaagtcgccg 3258

                                       
Query: 423  accaatctcatttgcatttcttcctgt 449
            || |||||||| |||||||||||||||
Sbjct: 3257 actaatctcatctgcatttcttcctgt 3231
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                            
Query: 363      tgacccccatctgagctgctgcaagcttggttgggtagaaagccgtcgccaaagtcacca 422
                ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || 
Sbjct: 25864074 tgacccccatcagagctgctgcaagcttggttgggtagaaagctgtctccaaagtcgccg 25864133

                                           
Query: 423      accaatctcatttgcatttcttcctgt 449
                || |||||||| |||||||||||||||
Sbjct: 25864134 actaatctcatctgcatttcttcctgt 25864160
to top
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1003_A09
          Length = 150755

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                         
Query: 363   tgacccccatctgagctgctgcaagcttggttgggtagaaagccgtcgccaaagtcacca 422
             ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || 
Sbjct: 49861 tgacccccatcagagctgctgcaagcttggttgggtagaaagctgtctccaaagtcgccg 49920

                                        
Query: 423   accaatctcatttgcatttcttcctgt 449
             || |||||||| |||||||||||||||
Sbjct: 49921 actaatctcatctgcatttcttcctgt 49947
to top
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0689E12
          Length = 147516

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                          
Query: 363    tgacccccatctgagctgctgcaagcttggttgggtagaaagccgtcgccaaagtcacca 422
              ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || 
Sbjct: 136285 tgacccccatcagagctgctgcaagcttggttgggtagaaagctgtctccaaagtcgccg 136344

                                         
Query: 423    accaatctcatttgcatttcttcctgt 449
              || |||||||| |||||||||||||||
Sbjct: 136345 actaatctcatctgcatttcttcctgt 136371
to top
>dbj|AK059543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F01, full
           insert sequence
          Length = 611

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                       
Query: 363 tgacccccatctgagctgctgcaagcttggttgggtagaaagccgtcgccaaagtcacca 422
           ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || 
Sbjct: 132 tgacccccatcagagctgctgcaagcttggttgggtagaaagctgtctccaaagtcgccg 73

                                      
Query: 423 accaatctcatttgcatttcttcctgt 449
           || |||||||| |||||||||||||||
Sbjct: 72  actaatctcatctgcatttcttcctgt 46
to top
>dbj|AB071297.1| Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds
          Length = 3291

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                        
Query: 363  tgacccccatctgagctgctgcaagcttggttgggtagaaagccgtcgccaaagtcacca 422
            ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || 
Sbjct: 3266 tgacccccatcagagctgctgcaagcttggttgggtagaaagctgtctccaaagtcgccg 3207

                                       
Query: 423  accaatctcatttgcatttcttcctgt 449
            || |||||||| |||||||||||||||
Sbjct: 3206 actaatctcatctgcatttcttcctgt 3180
to top
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3420

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 367  ccccatctgagctgctgcaagcttggttggg 397
            |||||||||||||||||||||| ||||||||
Sbjct: 3346 ccccatctgagctgctgcaagcctggttggg 3316
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 367     ccccatctgagctgctgcaagcttggttggg 397
               |||||||||||||||||||||| ||||||||
Sbjct: 2208095 ccccatctgagctgctgcaagcctggttggg 2208125



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 28       atctgtagctagttacagca 47
                ||||||||||||||||||||
Sbjct: 18224360 atctgtagctagttacagca 18224379
to top
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1679_B08
          Length = 142529

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 367    ccccatctgagctgctgcaagcttggttggg 397
              |||||||||||||||||||||| ||||||||
Sbjct: 122788 ccccatctgagctgctgcaagcctggttggg 122818
to top
>gb|AY105182.1| Zea mays PCO117620 mRNA sequence
          Length = 671

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 369 ccatctgagctgctgcaagcttggttgg 396
           |||||||||||||||||||| |||||||
Sbjct: 178 ccatctgagctgctgcaagcctggttgg 151
to top
>ref|XM_679330.1| PREDICTED: Danio rerio similar to nicotinic acetylcholine receptor
            alpha 9c subunit (LOC556507), mRNA
          Length = 1551

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 57   tgagtatgtggcaaactgttac 78
            ||||||||||||||||||||||
Sbjct: 1395 tgagtatgtggcaaactgttac 1416
to top
>gb|AC154353.1| Mus musculus BAC clone RP24-547N14 from chromosome 12, complete sequence
          Length = 249825

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 319    gaactacattggtcattcaaac 340
              ||||||||||||||||||||||
Sbjct: 110832 gaactacattggtcattcaaac 110811
to top
>emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in linkage group 15, complete
              sequence
          Length = 229061

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 57     tgagtatgtggcaaactgttac 78
              ||||||||||||||||||||||
Sbjct: 104468 tgagtatgtggcaaactgttac 104447
to top
>gb|AC131316.8| Mus musculus chromosome 1, clone RP23-302H1, complete sequence
          Length = 237076

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     acatcaggcaacaatgacata 97
              |||||||||||||||||||||
Sbjct: 109237 acatcaggcaacaatgacata 109217
to top
>gb|AC016732.7| Homo sapiens BAC clone RP11-389E16 from 2, complete sequence
          Length = 176741

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   atcatcaccagcatccgtttt 277
             |||||||||||||||||||||
Sbjct: 69699 atcatcaccagcatccgtttt 69719
to top
>emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200853

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      tatgatttcttcgtttagaat 29
              |||||||||||||||||||||
Sbjct: 162670 tatgatttcttcgtttagaat 162690
to top
>ref|NM_126926.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ DNA
           binding / chromatin binding / helicase/ nucleic acid
           binding AT2G13370 mRNA, complete cds
          Length = 5932

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 255 ctatcatcaccagcatccgttttc 278
           ||||||||||||| ||||||||||
Sbjct: 125 ctatcatcaccagaatccgttttc 148
to top
>ref|XM_519499.1| PREDICTED: Pan troglodytes similar to DKFZP586J0619 protein
            (LOC463865), mRNA
          Length = 2016

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 1767 gtccagcagcgcctggaact 1748
to top
>gb|AC093029.4| Homo sapiens chromosome X clone XX-16186 map p11.4, complete
           sequence
          Length = 115625

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  acctctgagtatgtggcaaa 71
           ||||||||||||||||||||
Sbjct: 466 acctctgagtatgtggcaaa 485
to top
>gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p11.4, complete
             sequence
          Length = 138039

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    acctctgagtatgtggcaaa 71
             ||||||||||||||||||||
Sbjct: 82382 acctctgagtatgtggcaaa 82401
to top
>gb|AC148942.1| Pan troglodytes chromosome X clone RP43-025L12 map human ortholog p11.4
              complete sequence
          Length = 141470

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     acctctgagtatgtggcaaa 71
              ||||||||||||||||||||
Sbjct: 107613 acctctgagtatgtggcaaa 107632
to top
>emb|AJ459965.1|ECA459965 Equus caballus CRISP3 gene for cysteine-rich secretory protein 3 and
             TPX1 gene for testis specific protein 1
          Length = 137520

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    acaatgacatatactacatg 106
             ||||||||||||||||||||
Sbjct: 20818 acaatgacatatactacatg 20837
to top
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     atctgtagctagttacagca 47
              ||||||||||||||||||||
Sbjct: 125535 atctgtagctagttacagca 125516
to top
>gb|AY358482.1| Homo sapiens clone DNA77631 HILV1821 (UNQ1821) mRNA, complete cds
          Length = 3437

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 gtccagcagcgcctggaact 323
           ||||||||||||||||||||
Sbjct: 135 gtccagcagcgcctggaact 116
to top
>gb|U58749.1| Caenorhabditis elegans cosmid B0496, complete sequence
          Length = 40466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   caagactacaatagagacaa 184
             ||||||||||||||||||||
Sbjct: 13715 caagactacaatagagacaa 13734
to top
>emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 on chromosome 6p11.2-12.3
             Contains the GCLC gene for glutamate-cysteine ligase
             catalytic subunit (GCS), a novel gene and one CpG island,
             complete sequence
          Length = 164027

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gcaaggccaacaaaacatca 158
             ||||||||||||||||||||
Sbjct: 25416 gcaaggccaacaaaacatca 25397
to top
>emb|Z54354.1|SPAC2G11 S.pombe chromosome I cosmid c2G11
          Length = 36162

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   gactacaatagagacaaaaa 187
             ||||||||||||||||||||
Sbjct: 16176 gactacaatagagacaaaaa 16195
to top
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     atttcagagcctaaatcatc 249
               ||||||||||||||||||||
Sbjct: 3436050 atttcagagcctaaatcatc 3436069
to top
>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence
          Length = 165682

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gccttggaatttcagagcct 241
           ||||||||||||||||||||
Sbjct: 770 gccttggaatttcagagcct 789
to top
>gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, complete sequence
          Length = 183453

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     acctctgagtatgtggcaaa 71
              ||||||||||||||||||||
Sbjct: 154822 acctctgagtatgtggcaaa 154841
to top
>dbj|AK128368.1| Homo sapiens cDNA FLJ46511 fis, clone THYMU3031868
          Length = 3051

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 2653 gtccagcagcgcctggaact 2634
to top
>gb|AC102953.5| Homo sapiens BAC clone RP11-1246C19 from 7, complete sequence
          Length = 148996

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    gtccagcagcgcctggaact 323
              ||||||||||||||||||||
Sbjct: 136092 gtccagcagcgcctggaact 136111
to top
>gb|AC007209.6| Arabidopsis thaliana chromosome 2 clone F14O4 map PR1, complete
             sequence
          Length = 55345

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   ctatcatcaccagcatccgttttc 278
             ||||||||||||| ||||||||||
Sbjct: 31221 ctatcatcaccagaatccgttttc 31244
to top
>ref|XM_935548.1| PREDICTED: Homo sapiens integrator complex subunit 1, transcript
            variant 7 (INT1), mRNA
          Length = 6916

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 3617 gtccagcagcgcctggaact 3598
to top
>ref|XM_942544.1| PREDICTED: Homo sapiens integrator complex subunit 1, transcript
            variant 11 (INT1), mRNA
          Length = 6914

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 3616 gtccagcagcgcctggaact 3597
to top
>ref|XM_291222.6| PREDICTED: Homo sapiens integrator complex subunit 1, transcript
            variant 1 (INT1), mRNA
          Length = 6913

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 3616 gtccagcagcgcctggaact 3597
to top
>dbj|AK221299.1| Arabidopsis thaliana mRNA for pseudogene, partial cds, clone:
           RAFL24-27-A16
          Length = 4006

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 255 ctatcatcaccagcatccgttttc 278
           ||||||||||||| ||||||||||
Sbjct: 125 ctatcatcaccagaatccgttttc 148
to top
>gb|AC159251.2| Mus musculus BAC clone RP24-113B8 from chromosome 12, complete sequence
          Length = 200896

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   tgttccttatattcatgttc 216
             ||||||||||||||||||||
Sbjct: 90998 tgttccttatattcatgttc 91017
to top
>tpg|BK005720.1| TPA: TPA_exp: Homo sapiens integrator complex subunit 1 mRNA, partial
            cds
          Length = 4434

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 1134 gtccagcagcgcctggaact 1115
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 28       atctgtagctagttacagca 47
                ||||||||||||||||||||
Sbjct: 21773482 atctgtagctagttacagca 21773463
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 140      caaggccaacaaaacatcag 159
                ||||||||||||||||||||
Sbjct: 35912544 caaggccaacaaaacatcag 35912563
to top
>gb|AF053982.1|AF053982 Pseudomonas aeruginosa putative molybdoterin-guanine dinucleotide
            biosynthesis protein A (mobA) and cytochrome c precursor
            protein (snr1) genes, complete cds; and unknown genes
          Length = 2615

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 1872 gtccagcagcgcctggaact 1891
to top
>gb|AE004728.1| Pseudomonas aeruginosa PAO1, section 289 of 529 of the complete
            genome
          Length = 10982

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 4620 gtccagcagcgcctggaact 4639
to top
>dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D11
          Length = 138108

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   caaggccaacaaaacatcag 159
             ||||||||||||||||||||
Sbjct: 11222 caaggccaacaaaacatcag 11241
to top
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0052M16
          Length = 145423

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    atctgtagctagttacagca 47
             ||||||||||||||||||||
Sbjct: 25573 atctgtagctagttacagca 25592
to top
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0047E05
          Length = 184323

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     atctgtagctagttacagca 47
              ||||||||||||||||||||
Sbjct: 147761 atctgtagctagttacagca 147780
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 28       atctgtagctagttacagca 47
                ||||||||||||||||||||
Sbjct: 22083681 atctgtagctagttacagca 22083662
to top
>gb|BC004286.1| Homo sapiens integrator complex subunit 1, mRNA (cDNA clone
            IMAGE:3618123), partial cds
          Length = 4179

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 1001 gtccagcagcgcctggaact 982
to top
>dbj|AB037861.1| Homo sapiens mRNA for KIAA1440 protein, partial cds
          Length = 4434

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  gtccagcagcgcctggaact 323
            ||||||||||||||||||||
Sbjct: 1134 gtccagcagcgcctggaact 1115


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,463,598
Number of Sequences: 3902068
Number of extensions: 4463598
Number of successful extensions: 79073
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78841
Number of HSP's gapped (non-prelim): 232
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top