>TOP1_SCHPO (P07799) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 814

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = -3

Query: 441 FNPNKTTTLIRLCSRCKQVGHNKATCEAAFL*TKEFLYLQYV*QVH--PEAADERESFPA 268
           F  N     +++C  C    HN           KEF    +    H   +  +E++S P 
Sbjct: 252 FQDNFFRDFLKVCDECN-FNHN----------IKEFSKCDFTQMFHHFEQKREEKKSMP- 299

Query: 267 KIGREKEKASRQKKEEVERESSWWCLL 187
              +E++KA +QKK+E E E   WC+L
Sbjct: 300 ---KEQKKAIKQKKDE-EEEKYKWCIL 322

>RIPK5_FUGRU (Q4VSN2) Receptor-interacting serine/threonine-protein kinase 5 (EC|
           2.7.11.1) (Dusty protein kinase) (Dusty PK)
          Length = 921

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 5   LSKDVAHLLTIISSQPPLLKKPLQVTAFISYKQTNNGVNSCMSSTVITHPPSLVLSIYCT 184
           L++D+         Q  LLKK L+ T     +   N  N+C SST+ +   SL  S +  
Sbjct: 12  LARDLTRAFNGYHKQTVLLKKNLKETHAFFREMRQNYSNTCASSTLSSDSASLETSQFSC 71

Query: 185 YNRHHHE 205
            +   HE
Sbjct: 72  ISFPSHE 78

>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)|
            (Pam/highwire/rpm-1 protein) (Regulator of presynaptic
            morphology protein 1) (Synapse defective protein 3)
          Length = 3766

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 288  ERESFPAKIGREKEKASRQKKEEVERESS 202
            +RE  P K   ++EKA + +++E+E+ES+
Sbjct: 2248 QRELIPLKADTDREKAVKLRRKEIEKESN 2276

>GLSA_CAUCR (Q9ABF2) Glutaminase (EC 3.5.1.2)|
          Length = 306

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 68  PLQVTAFISYKQTNNGVNSCMSST-VITHPPSLVLSIYCTYNRHHHELSLSTSSFFCREA 244
           P   T+ +++   N  + S M +   ITH P  V++ YC       + +LS S   CR+ 
Sbjct: 153 PAVATSELAHAWQNRAIASLMRAKGTITHDPEAVVAAYC------RQCALSMS---CRQL 203

Query: 245 FSFSLPIFAG 274
               LP+ AG
Sbjct: 204 ARAFLPLAAG 213

>PORC_METTH (O27772) Pyruvate synthase subunit porC (EC 1.2.7.1) (Pyruvate|
           oxidoreductase gamma chain) (POR) (Pyruvic-ferredoxin
           oxidoreductase gamma subunit)
          Length = 180

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 285 RESFPAKIGREKEKASRQKKEEVER 211
           +E+FP KIG +  +A+R   EE+E+
Sbjct: 151 KETFPGKIGEKNAEAARMAYEEIEK 175

>RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-binding motif protein|
           25) (RNA-binding region-containing protein 7) (Protein
           S164)
          Length = 784

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 286 KRELPSENRKREREGFPAKEGRSRERE 206
           ++E+  E R+RERE    +E R RERE
Sbjct: 243 RQEIEKERRERERERERERERRERERE 269

>Y688_RICPR (Q9ZCN5) Hypothetical protein RP688|
          Length = 297

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 85  LHII*TNKQRCQFMHVFYSNYPSPFFGSLHLLY 183
           L I   +K++ +F+HV Y  YP+ FF   H LY
Sbjct: 188 LDIFLFHKEKDKFIHVIYDKYPNDFFYD-HELY 219

>RPOZ_STRP8 (P68842) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 104

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 309 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 208
           +HP+ + +RE+  AKI  E   KE+  R+ KE++ +E
Sbjct: 60  IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96

>RPOZ_STRP6 (Q5XAP2) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 104

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 309 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 208
           +HP+ + +RE+  AKI  E   KE+  R+ KE++ +E
Sbjct: 60  IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96

>RPOZ_STRP3 (P68841) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 104

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 309 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 208
           +HP+ + +RE+  AKI  E   KE+  R+ KE++ +E
Sbjct: 60  IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96

>RPOZ_STRP1 (P68840) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 104

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 309 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 208
           +HP+ + +RE+  AKI  E   KE+  R+ KE++ +E
Sbjct: 60  IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,573,291
Number of Sequences: 219361
Number of extensions: 1138356
Number of successful extensions: 3891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3872
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)