ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothet... 68 2e-08
2gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno... 68 2e-08
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
4dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
5dbj|AK066542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
6dbj|AK062557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
8emb|CR376789.4| Zebrafish DNA sequence from clone DKEYP-87A2 in ... 46 0.065
9gb|AC131116.3| Mus musculus BAC clone RP24-344M21 from chromosom... 42 1.0
10emb|BX324121.9| Zebrafish DNA sequence from clone DKEY-164J20 in... 42 1.0
11emb|CR605890.1| full-length cDNA clone CS0DA012YP15 of Neuroblas... 42 1.0
12gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In... 42 1.0
13gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6... 42 1.0
14gb|AF133300.2|AF133300 Mus musculus MOR 3'Beta1, MOR 3'Beta2, MO... 42 1.0
15emb|AL953857.7| Zebrafish DNA sequence from clone CH211-127M7, c... 42 1.0
16gb|AC013255.5| Drosophila melanogaster clone BACR27A22, complete... 40 4.0
17gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete... 40 4.0
18ref|XM_610880.2| PREDICTED: Bos taurus similar to ADAM metallope... 40 4.0
19gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosom... 40 4.0
20gb|AC125201.4| Mus musculus BAC clone RP23-224O3 from 14, comple... 40 4.0
21gb|AC159230.2| Mus musculus BAC clone RP24-378I19 from chromosom... 40 4.0
22gb|AE014176.1| Mus musculus piebald deletion region section 4 of... 40 4.0
23dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, comp... 40 4.0
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
26ref|NM_001015470.1| Drosophila melanogaster CG40298-PA.3 (CG4029... 40 4.0
27dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
28dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
29gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83... 40 4.0
30gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 40 4.0
31emb|CT030156.9| Mouse DNA sequence from clone RP23-191J8 on chro... 40 4.0

>ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0082M15.22), mRNA
          Length = 3246

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 249  tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298
            |||||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 3217 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 3168



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>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
              sequence
          Length = 158550

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                
Query: 249    tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298
              |||||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 137342 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 137293



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                  
Query: 249      tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298
                |||||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 20927049 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 20927098



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>dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L07, full
            insert sequence
          Length = 3864

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 249  tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298
            |||||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 3659 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 3610



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>dbj|AK066542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069N05, full
            insert sequence
          Length = 2734

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 249  tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298
            |||||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 2564 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 2515



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>dbj|AK062557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H02, full
            insert sequence
          Length = 2018

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 249  tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298
            |||||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 1673 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 1624



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                  
Query: 249      tccagtacctggagcacgacgggttctggtgtatcgccctcaaaagccac 298
                |||||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 20938313 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 20938362



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>emb|CR376789.4| Zebrafish DNA sequence from clone DKEYP-87A2 in linkage group 6,
             complete sequence
          Length = 190610

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 63    tagagggaaatgttagaaagaaa 85
             |||||||||||||||||||||||
Sbjct: 47056 tagagggaaatgttagaaagaaa 47078



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>gb|AC131116.3| Mus musculus BAC clone RP24-344M21 from chromosome 7, complete sequence
          Length = 190325

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    tcatgggctcatagcaaagag 144
              |||||||||||||||||||||
Sbjct: 119632 tcatgggctcatagcaaagag 119612



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>emb|BX324121.9| Zebrafish DNA sequence from clone DKEY-164J20 in linkage group 25,
              complete sequence
          Length = 181165

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 77     agaaagaaactatgtttacaacaac 101
              ||||||||||||||||| |||||||
Sbjct: 133438 agaaagaaactatgtttgcaacaac 133462



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>emb|CR605890.1| full-length cDNA clone CS0DA012YP15 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1941

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 233  agctgcagcaaggccttccag 253
            |||||||||||||||||||||
Sbjct: 1896 agctgcagcaaggccttccag 1876



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>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region,
             complete sequence
          Length = 147086

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   agctgcagcaaggccttccag 253
             |||||||||||||||||||||
Sbjct: 43298 agctgcagcaaggccttccag 43318



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>gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6 In BCRL2-GGT Region,
              complete sequence
          Length = 235395

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 233    agctgcagcaaggccttccag 253
              |||||||||||||||||||||
Sbjct: 234827 agctgcagcaaggccttccag 234847



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>gb|AF133300.2|AF133300 Mus musculus MOR 3'Beta1, MOR 3'Beta2, MOR 3'Beta3, and MOR 3'Beta4
           genes, complete cds; Cbx3 pseudogene, complete sequence;
           and MOR 3'Beta5 and MOR 3'Beta6 genes, complete cds
          Length = 92000

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 124 tcatgggctcatagcaaagag 144
           |||||||||||||||||||||
Sbjct: 7   tcatgggctcatagcaaagag 27



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>emb|AL953857.7| Zebrafish DNA sequence from clone CH211-127M7, complete sequence
          Length = 175586

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 77     agaaagaaactatgtttacaacaac 101
              ||||||||||||||||| |||||||
Sbjct: 171350 agaaagaaactatgtttgcaacaac 171374



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>gb|AC013255.5| Drosophila melanogaster clone BACR27A22, complete sequence
          Length = 148414

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    gaaagaaactatgtttacaa 97
             ||||||||||||||||||||
Sbjct: 15140 gaaagaaactatgtttacaa 15159



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>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence
          Length = 192819

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    gaaagaaactatgtttacaa 97
             ||||||||||||||||||||
Sbjct: 34994 gaaagaaactatgtttacaa 34975



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>ref|XM_610880.2| PREDICTED: Bos taurus similar to ADAM metallopeptidase domain 21
           preproprotein (LOC532366), mRNA
          Length = 2157

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 85  actatgtttacaacaacaaataca 108
           |||||||| |||||||||||||||
Sbjct: 719 actatgttgacaacaacaaataca 696



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>gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosome 19, complete
             sequence
          Length = 189613

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    atgttagaaagaaactatgt 91
             ||||||||||||||||||||
Sbjct: 75553 atgttagaaagaaactatgt 75572



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>gb|AC125201.4| Mus musculus BAC clone RP23-224O3 from 14, complete sequence
          Length = 189542

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    cgccctcaaaagccacgccc 302
              ||||||||||||||||||||
Sbjct: 125422 cgccctcaaaagccacgccc 125441



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>gb|AC159230.2| Mus musculus BAC clone RP24-378I19 from chromosome 13, complete
             sequence
          Length = 190521

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaatgttagaaagaaactat 89
             ||||||||||||||||||||
Sbjct: 73636 aaatgttagaaagaaactat 73655



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>gb|AE014176.1| Mus musculus piebald deletion region section 4 of 11 of the complete
              sequence
          Length = 395229

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    cgccctcaaaagccacgccc 302
              ||||||||||||||||||||
Sbjct: 209536 cgccctcaaaagccacgccc 209555



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>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 85      actatgtttacaacaacaaataca 108
               ||||||||| ||||||||||||||
Sbjct: 1191266 actatgttttcaacaacaaataca 1191289



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     tagaaagaaactatgtttacaaca 99
              ||||||||||||||||||| ||||
Sbjct: 352492 tagaaagaaactatgtttaaaaca 352515



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 66      agggaaatgttagaaagaaa 85
               ||||||||||||||||||||
Sbjct: 3567612 agggaaatgttagaaagaaa 3567631



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>ref|NM_001015470.1| Drosophila melanogaster CG40298-PA.3 (CG40298), mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  gaaagaaactatgtttacaa 97
           ||||||||||||||||||||
Sbjct: 274 gaaagaaactatgtttacaa 293



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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1276_B06
          Length = 175174

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     agggaaatgttagaaagaaa 85
              ||||||||||||||||||||
Sbjct: 135680 agggaaatgttagaaagaaa 135699



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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644B06
          Length = 194509

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    tagaaagaaactatgtttacaaca 99
             ||||||||||||||||||| ||||
Sbjct: 62445 tagaaagaaactatgtttaaaaca 62468



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>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete
              sequence
          Length = 491220

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     gaaagaaactatgtttacaa 97
              ||||||||||||||||||||
Sbjct: 386094 gaaagaaactatgtttacaa 386113



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>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     actatgtttacaacaacaaataca 108
              ||||||||| ||||||||||||||
Sbjct: 567125 actatgttttcaacaacaaataca 567148



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>emb|CT030156.9| Mouse DNA sequence from clone RP23-191J8 on chromosome 13, complete
             sequence
          Length = 189564

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaatgttagaaagaaactat 89
             ||||||||||||||||||||
Sbjct: 86968 aaatgttagaaagaaactat 86949


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,381,825
Number of Sequences: 3902068
Number of extensions: 2381825
Number of successful extensions: 38545
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38467
Number of HSP's gapped (non-prelim): 78
length of query: 307
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 285
effective length of database: 17,147,199,772
effective search space: 4886951935020
effective search space used: 4886951935020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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