>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +3

Query: 189 HWQTSLPASSGELAPTW*ICQPCHSPADAPLGVPRGC 299
           H Q SL    G L P W   Q CHS     LG P+ C
Sbjct: 174 HLQASLSQRLGSLDPGW--LQRCHSEVPDFLGAPKAC 208

>TNNI_PONLE (P05547) Troponin I (TnI)|
          Length = 201

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 285 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 193
           + E+++QV+D  GKF +  L +++K   KFA
Sbjct: 126 INELNIQVNDLRGKFIKPTLKKVSKYENKFA 156

>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)|
          Length = 511

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/75 (21%), Positives = 38/75 (50%)
 Frame = +2

Query: 191 LANFLACFVRRASADLVNLPALSLTCRCTSWSPTRLSMPKTPSSTLKLISSRSTTGMAFS 370
           L+N+L+  ++  + +L  L    +  R  + S + +S+ K+P+ST++++ +      A  
Sbjct: 272 LSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALK 331

Query: 371 EKISRGRTGVAKRSS 415
            K    + G+   +S
Sbjct: 332 TKHDTPKYGLLYHAS 346

>BGAL_STAXY (O33815) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 994

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 38  YKQNEIVG*TSNKYSSMNTTLI*SDWYKFTYF-SFESHFNPS*YSSTTTL 184
           Y+Q E       +Y++ N TL+  +WY F YF S E++ N S    + TL
Sbjct: 27  YQQGEADYHFETRYNTRNATLLNGEWY-FQYFESLEAYLNHSNKQESKTL 75

>TNNI_DROME (P36188) Troponin I (Tn I) (Protein wings apart-A) (Protein heldup)|
          Length = 268

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 285 LQEVHLQVSDKAGKFTRSALARLTKQARKFA 193
           + +++ QV+D  GKF + AL +++K   KFA
Sbjct: 184 INDLNAQVNDLRGKFVKPALKKVSKYENKFA 214

>BRR2_YEAST (P32639) Pre-mRNA-splicing helicase BRR2 (EC 3.6.1.-) (Protein|
            Snu246)
          Length = 2163

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 110  DWYKFTYFSFESHFNPS*YS-STTTLGALANFLACFVRRASADLV 241
            DW+ ++YF    H NPS Y    T+   ++ FL+  V     DLV
Sbjct: 1771 DWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLV 1815

>CT078_HUMAN (Q9BR46) Hypothetical protein C20orf78|
          Length = 151

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 138 LNLILTRRSTHQLLPWAHWQ 197
           L+L+LTR+   Q L W+HWQ
Sbjct: 71  LDLLLTRKKRSQGLHWSHWQ 90

>HMSH_DROME (Q03372) Muscle segmentation homeobox (Protein drop) (Protein msh)|
          Length = 515

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 269 RCTSWSPTRLSMPKTPSSTLKLISSRSTTGMAFSEKISRGRTGVAKRSSFRPSNP 433
           R T  SPT      TP+  L + SS S +G      +S G    +  ++  PS+P
Sbjct: 15  RQTMTSPTVPPSSNTPAGNLIITSSSSNSGSNSGSNMSSGNMTSSNLTNLSPSHP 69

>MPP5_PONPY (Q5RDQ2) MAGUK p55 subfamily member 5|
          Length = 675

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 295 VVHAEDTFQHLETHLKPLHHRHG 363
           + +A+D  Q ++T LKP+HH+ G
Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205

>MPP5_HUMAN (Q8N3R9) MAGUK p55 subfamily member 5|
          Length = 675

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 295 VVHAEDTFQHLETHLKPLHHRHG 363
           + +A+D  Q ++T LKP+HH+ G
Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205

>MD1L1_CRIGR (Q80YF0) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1)
          Length = 717

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 247 ASLVTHLQMHLLESHEVVHAEDTFQHLETHLKPLHHRHGLLREDQQG-QDRCGEAEQLQ 420
           A++V +++  LL    +       +   THL+ +   +GLL E+ +G Q + G  E++Q
Sbjct: 239 AAVVKNMKSELLRLPRMERELKRLREENTHLREMKETNGLLTEELEGLQRKLGRQEKMQ 297

>GLMU_RALSO (Q8Y304) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 333 SFKVLEGVFGMDNLVGLQEVHLQVSDKAGKFTRSALARLTK-QARKFANAPRVVVDEYYD 157
           +   L G  G D+L G+  VHL      G+  R A  R+T+   +K AN  ++ + E   
Sbjct: 108 TLNALVGAAGQDHL-GVLTVHLDDPTGYGRIVRDATGRITRIVEQKDANETQLAIHEVNT 166

Query: 156 GL 151
           G+
Sbjct: 167 GI 168

>NFRKB_MOUSE (Q6PIJ4) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1296

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 275 TSWSPTRLSMPKTPSSTLKLISSRSTTGMAFSEKISRG 388
           +SW P+  +   +P+  L+++ + STT M  ++KI  G
Sbjct: 216 SSWLPSSPARSPSPAVPLRVVPTLSTTDMKTADKIELG 253

>KLKR_PRANA (P32824) Renal glandular kallikrein precursor (EC 3.4.21.35)|
           (Tissue kallikrein)
          Length = 263

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 275 TSWSPTRLSMPKTPSSTLKLISSRS 349
           TSW PT  ++P  P    KLI  RS
Sbjct: 229 TSWGPTPCALPNVPGIYTKLIEYRS 253

>APJ_MOUSE (Q9WV08) Apelin receptor (G-protein coupled receptor APJ)|
           (Angiotensin receptor-like 1) (MSR)
          Length = 377

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 119 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 9
           CT ++ +  C    +Y  F+ +FR ACTS+     CC
Sbjct: 292 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 324

>APJ_MACMU (O97666) Apelin receptor (G-protein coupled receptor APJ)|
           (Angiotensin receptor-like 1)
          Length = 380

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 119 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 9
           CT ++ +  C    +Y  F+ +FR ACTS+     CC
Sbjct: 294 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 326

>APJ_HUMAN (P35414) Apelin receptor (G-protein coupled receptor APJ)|
           (Angiotensin receptor-like 1) (HG11)
          Length = 380

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 119 CTSLTKLVLCSWRSIYLMFNQQFRSACTSLTE*Q*CC 9
           CT ++ +  C    +Y  F+ +FR ACTS+     CC
Sbjct: 294 CTCISYVNSCLNPFLYAFFDPRFRQACTSML----CC 326

>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding|
            cassette transporter 1) (ATP-binding cassette 1) (ABC-1)
          Length = 2261

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 209  CFVRRASADLVNLPALSLTCRCTSWSPTRLSMP-----KTPSSTLKLISS 343
            CF +++     NLP L+L      WS T L  P     K PS+   +++S
Sbjct: 1723 CFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTS 1772

>ABCA1_HUMAN (O95477) ATP-binding cassette sub-family A member 1 (ATP-binding|
            cassette transporter 1) (ATP-binding cassette 1) (ABC-1)
            (Cholesterol efflux regulatory protein)
          Length = 2261

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 209  CFVRRASADLVNLPALSLTCRCTSWSPTRLSMP-----KTPSSTLKLISS 343
            CF +++     NLP L+L      WS T L  P     K PS+   +++S
Sbjct: 1723 CFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTS 1772

>VCLA_PEA (P02855) Provicilin (Type A) (Fragment)|
          Length = 275

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 325 LETHLKPLHHRHGLLREDQQGQDR 396
           LE H K  HHR GL  + QQ Q++
Sbjct: 10  LEEHEKETHHRRGLRDKRQQSQEK 33

>V192_BPT7 (P03789) Gene 19.2 protein|
          Length = 85

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 260 LTCRCTSWSPTRLSMPKTPSSTLKLISSRST 352
           +TC   SW+  RL++  +   TL L+  RST
Sbjct: 54  MTCASVSWNTVRLALRYSSCLTLTLVMPRST 84

>SLIK2_MOUSE (Q810C0) SLIT and NTRK-like protein 2 precursor|
          Length = 846

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 232 RPGEFASLVTHLQMHLLESHEVVHAEDTFQHLET 333
           RPG F+ L T  ++HL  +   V  EDTF  LE+
Sbjct: 102 RPGAFSGLKTLKRLHLNNNKLEVLREDTFLGLES 135

>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 917

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 257 SLTCRCTSWSPTRLSMPKTPSS-TLKLISSRSTTGMA 364
           +LTCR  +W P ++S    P +  L L S+ ST  +A
Sbjct: 764 TLTCRAEAWPPAQISWRAPPGALNLGLSSNNSTLSVA 800

>CADH1_RAT (Q9R0T4) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)|
           (Cadherin-1) (CD324 antigen) [Contains: E-Cad/CTF1;
           E-Cad/CTF2; E-Cad/CTF3]
          Length = 886

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
 Frame = +1

Query: 262 HLQMHLLESHEVVHAED-TFQHLETH--LKPL---HHRH 360
           HL++H LE+  +VHA D +++ L T   LK L   HHRH
Sbjct: 92  HLKLHKLETSFLVHAWDSSYRKLSTKVTLKSLGHHHHRH 130

>WDR43_HUMAN (Q15061) WD-repeat protein 43|
          Length = 720

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 254 LSLTCRCTSWSPTRLSMPKTP 316
           LS TC C +W+P RL   ++P
Sbjct: 101 LSGTCTCLAWAPARLQAKESP 121

>GEF1_SCHPO (Q09763) Rho guanine nucleotide exchange factor gef1|
          Length = 753

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 146 HFNPS*YSSTTTLGALANFLACFVRRASADLVN--LPALSLTCRCTSWSPTRLSMPKTPS 319
           H N S   ++  +  L +F+A      S++  +  LP  S   +    S T  SMP + S
Sbjct: 180 HTNTSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSSTDEQEKRSSVTLASMPSSHS 239

Query: 320 STLKLISSRSTTGMAFSEKI 379
           ST  L+S   TT  +FS K+
Sbjct: 240 STASLLSPLDTT--SFSTKL 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,627,808
Number of Sequences: 219361
Number of extensions: 1140919
Number of successful extensions: 3421
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3418
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)