Clone Name | rbastl45g03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, complete sequence Length = 122682 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 ttggatttgattccaagcacc 410 ||||||||||||||||||||| Sbjct: 2444 ttggatttgattccaagcacc 2424
>gb|AC163214.4| Mus musculus chromosome 5, clone RP23-467O1, complete sequence Length = 200882 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 ttggatttgattccaagcacc 410 ||||||||||||||||||||| Sbjct: 165716 ttggatttgattccaagcacc 165696
>emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in linkage group 5, complete sequence Length = 122930 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 gtcaaatctgagatgaagcat 134 ||||||||||||||||||||| Sbjct: 39964 gtcaaatctgagatgaagcat 39944
>dbj|AP006336.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT07E09, TM0293, complete sequence Length = 113091 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 tggtgagaatagggggcaggt 387 ||||||||||||||||||||| Sbjct: 46141 tggtgagaatagggggcaggt 46121
>gb|DP000036.1| Papio anubis target 106 genomic scaffold Length = 492848 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 tcagtactctcaagtatgcatcttg 176 |||||||||||||| |||||||||| Sbjct: 83844 tcagtactctcaagaatgcatcttg 83868
>emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in linkage group 5, complete sequence Length = 191256 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 gtcaaatctgagatgaagcat 134 ||||||||||||||||||||| Sbjct: 90149 gtcaaatctgagatgaagcat 90169
>emb|AL357094.4|CNS05TDT Human chromosome 14 DNA sequence BAC R-14N4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158151 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 aagtatgcatcttgtaagaca 183 ||||||||||||||||||||| Sbjct: 99299 aagtatgcatcttgtaagaca 99319
>gb|AC132899.11| Mus musculus chromosome 15, clone RP24-367P22, complete sequence Length = 152183 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gccatgtgttcagcttccaa 33 |||||||||||||||||||| Sbjct: 18827 gccatgtgttcagcttccaa 18808
>gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195335 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgttcagcttccaaaagctg 39 |||||||||||||||||||| Sbjct: 186984 tgttcagcttccaaaagctg 187003
>gb|AC170265.4| Mus musculus BAC RP23-54H4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210754 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tgttcagcttccaaaagctg 39 |||||||||||||||||||| Sbjct: 121222 tgttcagcttccaaaagctg 121203
>gb|AC111106.10| Mus musculus chromosome 3, clone RP23-193O12, complete sequence Length = 202749 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 125242 atagaataagcttacagtgc 125223
>gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, complete sequence Length = 137626 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gccatgtgttcagcttccaa 33 |||||||||||||||||||| Sbjct: 749 gccatgtgttcagcttccaa 768
>gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's Hospital Oakland Research Institute) complete sequence Length = 226439 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 agtatgcatcttgtaagaca 183 |||||||||||||||||||| Sbjct: 98280 agtatgcatcttgtaagaca 98261
>gb|AC122194.4| Mus musculus BAC clone RP23-47D6 from chromosome 13, complete sequence Length = 192347 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgttcagcttccaaaagctg 39 |||||||||||||||||||| Sbjct: 183595 tgttcagcttccaaaagctg 183614
>gb|AC122359.5| Mus musculus BAC clone RP23-421B1 from chromosome 6, complete sequence Length = 194338 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgttcagcttccaaaagctg 39 |||||||||||||||||||| Sbjct: 127025 tgttcagcttccaaaagctg 127044
>gb|AC117201.2| Mus musculus BAC clone RP23-216E6 from 16, complete sequence Length = 218980 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 134 ttgccaaatcttcaagcttcagtactct 161 |||| |||| |||||||||||||||||| Sbjct: 67886 ttgcaaaattttcaagcttcagtactct 67859
>ref|NM_011674.2| Mus musculus UDP galactosyltransferase 8A (Ugt8a), mRNA Length = 3439 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 2881 atagaataagcttacagtgc 2862
>gb|AC138774.4| Homo sapiens BAC clone RP11-1320P3 from UL, complete sequence Length = 194050 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cttccaaaagctgtctggga 46 |||||||||||||||||||| Sbjct: 187964 cttccaaaagctgtctggga 187945
>gb|BC016885.1| Mus musculus UDP galactosyltransferase 8A, mRNA (cDNA clone MGC:18397 IMAGE:4223057), complete cds Length = 3439 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 2881 atagaataagcttacagtgc 2862
>gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, complete sequence Length = 229633 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cagtcaaatctgagatgaag 131 |||||||||||||||||||| Sbjct: 95774 cagtcaaatctgagatgaag 95793
>gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184834 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tttggatttgattccaagca 408 |||||||||||||||||||| Sbjct: 64239 tttggatttgattccaagca 64220
>dbj|AK128994.1| Mus musculus cDNA fis, clone TRACH3026744, highly similar to 2-hydroxyacylsphingosine 1-beta-galactosyltransferase precursor (EC 2.4.1.45) Length = 3598 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 2880 atagaataagcttacagtgc 2861
>gb|AC091683.53| Mus musculus strain C57BL/6J clone rp23-155l11 map 13, complete sequence Length = 236314 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgttcagcttccaaaagctg 39 |||||||||||||||||||| Sbjct: 59060 tgttcagcttccaaaagctg 59079
>dbj|AK137364.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630028M01 product:UDP-glucuronosyltransferase 8, full insert sequence Length = 3600 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 2887 atagaataagcttacagtgc 2868
>dbj|AK137249.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530068O09 product:unclassifiable, full insert sequence Length = 3310 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tggatttgattccaagcacc 410 |||||||||||||||||||| Sbjct: 2048 tggatttgattccaagcacc 2029
>dbj|AK144005.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530015P08 product:UDP-glucuronosyltransferase 8, full insert sequence Length = 3671 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 2887 atagaataagcttacagtgc 2868
>dbj|AK162575.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630020O21 product:solute carrier family 1 (glial high affinity glutamate transporter), member 3, full insert sequence Length = 1356 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gccatgtgttcagcttccaa 33 |||||||||||||||||||| Sbjct: 645 gccatgtgttcagcttccaa 626
>gb|AC008846.7| Homo sapiens chromosome 5 clone CTD-2165G8, complete sequence Length = 92740 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 caggtgtttggatttgattc 402 |||||||||||||||||||| Sbjct: 52504 caggtgtttggatttgattc 52485
>dbj|AK163650.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830013E23 product:UDP-glucuronosyltransferase 8, full insert sequence Length = 3392 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 2848 atagaataagcttacagtgc 2829
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgcatcatatctagctagaa 318 |||||||||||||||||||| Sbjct: 28101887 cgcatcatatctagctagaa 28101868
>gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, complete sequence Length = 155481 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttcagcttccaaaagctgtc 41 |||||||||||||||||||| Sbjct: 109269 ttcagcttccaaaagctgtc 109288
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgcatcatatctagctagaa 318 |||||||||||||||||||| Sbjct: 99382 cgcatcatatctagctagaa 99363
>gb|U48896.1|MMCGT6 Mus musculus UDP-galactose:ceramide galactosyltransferase (Cgt) gene, exon 6 and complete cds Length = 3009 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 atagaataagcttacagtgc 292 |||||||||||||||||||| Sbjct: 1553 atagaataagcttacagtgc 1534
>emb|AL731831.17| Mouse DNA sequence from clone RP23-105O13 on chromosome 2, complete sequence Length = 218818 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tggatttgattccaagcacc 410 |||||||||||||||||||| Sbjct: 27661 tggatttgattccaagcacc 27642
>emb|AL731717.11| Mouse DNA sequence from clone RP23-92C4 on chromosome X, complete sequence Length = 234900 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ttggatttgattccaagcac 409 |||||||||||||||||||| Sbjct: 51491 ttggatttgattccaagcac 51510 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,155,451 Number of Sequences: 3902068 Number of extensions: 3155451 Number of successful extensions: 55215 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55148 Number of HSP's gapped (non-prelim): 67 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)