ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, com... 42 1.5
2gb|AC163214.4| Mus musculus chromosome 5, clone RP23-467O1, comp... 42 1.5
3emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in... 42 1.5
4dbj|AP006336.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.5
5gb|DP000036.1| Papio anubis target 106 genomic scaffold 42 1.5
6emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in ... 42 1.5
7emb|AL357094.4|CNS05TDT Human chromosome 14 DNA sequence BAC R-1... 42 1.5
8gb|AC132899.11| Mus musculus chromosome 15, clone RP24-367P22, c... 40 6.0
9gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Can... 40 6.0
10gb|AC170265.4| Mus musculus BAC RP23-54H4 (Roswell Park Cancer ... 40 6.0
11gb|AC111106.10| Mus musculus chromosome 3, clone RP23-193O12, co... 40 6.0
12gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, co... 40 6.0
13gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's H... 40 6.0
14gb|AC122194.4| Mus musculus BAC clone RP23-47D6 from chromosome ... 40 6.0
15gb|AC122359.5| Mus musculus BAC clone RP23-421B1 from chromosome... 40 6.0
16gb|AC117201.2| Mus musculus BAC clone RP23-216E6 from 16, comple... 40 6.0
17ref|NM_011674.2| Mus musculus UDP galactosyltransferase 8A (Ugt8... 40 6.0
18gb|AC138774.4| Homo sapiens BAC clone RP11-1320P3 from UL, compl... 40 6.0
19gb|BC016885.1| Mus musculus UDP galactosyltransferase 8A, mRNA (... 40 6.0
20gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, co... 40 6.0
21gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Ca... 40 6.0
22dbj|AK128994.1| Mus musculus cDNA fis, clone TRACH3026744, highl... 40 6.0
23gb|AC091683.53| Mus musculus strain C57BL/6J clone rp23-155l11 m... 40 6.0
24dbj|AK137364.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 6.0
25dbj|AK137249.1| Mus musculus adult male urinary bladder cDNA, RI... 40 6.0
26dbj|AK144005.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 6.0
27dbj|AK162575.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 6.0
28gb|AC008846.7| Homo sapiens chromosome 5 clone CTD-2165G8, compl... 40 6.0
29dbj|AK163650.1| Mus musculus 10 days neonate medulla oblongata c... 40 6.0
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
31gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, comple... 40 6.0
32dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
33gb|U48896.1|MMCGT6 Mus musculus UDP-galactose:ceramide galactosy... 40 6.0
34emb|AL731831.17| Mouse DNA sequence from clone RP23-105O13 on ch... 40 6.0
35emb|AL731717.11| Mouse DNA sequence from clone RP23-92C4 on chro... 40 6.0

>gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, complete sequence
          Length = 122682

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 390  ttggatttgattccaagcacc 410
            |||||||||||||||||||||
Sbjct: 2444 ttggatttgattccaagcacc 2424



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>gb|AC163214.4| Mus musculus chromosome 5, clone RP23-467O1, complete sequence
          Length = 200882

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 390    ttggatttgattccaagcacc 410
              |||||||||||||||||||||
Sbjct: 165716 ttggatttgattccaagcacc 165696



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>emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in linkage group 5,
             complete sequence
          Length = 122930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   gtcaaatctgagatgaagcat 134
             |||||||||||||||||||||
Sbjct: 39964 gtcaaatctgagatgaagcat 39944



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>dbj|AP006336.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT07E09, TM0293,
             complete sequence
          Length = 113091

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   tggtgagaatagggggcaggt 387
             |||||||||||||||||||||
Sbjct: 46141 tggtgagaatagggggcaggt 46121



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>gb|DP000036.1| Papio anubis target 106 genomic scaffold
          Length = 492848

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 152   tcagtactctcaagtatgcatcttg 176
             |||||||||||||| ||||||||||
Sbjct: 83844 tcagtactctcaagaatgcatcttg 83868



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>emb|BX640512.4| Zebrafish DNA sequence from clone DKEY-58F10 in linkage group 5,
             complete sequence
          Length = 191256

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 114   gtcaaatctgagatgaagcat 134
             |||||||||||||||||||||
Sbjct: 90149 gtcaaatctgagatgaagcat 90169



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>emb|AL357094.4|CNS05TDT Human chromosome 14 DNA sequence BAC R-14N4 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158151

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 163   aagtatgcatcttgtaagaca 183
             |||||||||||||||||||||
Sbjct: 99299 aagtatgcatcttgtaagaca 99319



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>gb|AC132899.11| Mus musculus chromosome 15, clone RP24-367P22, complete sequence
          Length = 152183

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    gccatgtgttcagcttccaa 33
             ||||||||||||||||||||
Sbjct: 18827 gccatgtgttcagcttccaa 18808



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>gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195335

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tgttcagcttccaaaagctg 39
              ||||||||||||||||||||
Sbjct: 186984 tgttcagcttccaaaagctg 187003



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>gb|AC170265.4| Mus musculus  BAC RP23-54H4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210754

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tgttcagcttccaaaagctg 39
              ||||||||||||||||||||
Sbjct: 121222 tgttcagcttccaaaagctg 121203



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>gb|AC111106.10| Mus musculus chromosome 3, clone RP23-193O12, complete sequence
          Length = 202749

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    atagaataagcttacagtgc 292
              ||||||||||||||||||||
Sbjct: 125242 atagaataagcttacagtgc 125223



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>gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, complete sequence
          Length = 137626

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  gccatgtgttcagcttccaa 33
           ||||||||||||||||||||
Sbjct: 749 gccatgtgttcagcttccaa 768



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>gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 226439

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   agtatgcatcttgtaagaca 183
             ||||||||||||||||||||
Sbjct: 98280 agtatgcatcttgtaagaca 98261



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>gb|AC122194.4| Mus musculus BAC clone RP23-47D6 from chromosome 13, complete sequence
          Length = 192347

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tgttcagcttccaaaagctg 39
              ||||||||||||||||||||
Sbjct: 183595 tgttcagcttccaaaagctg 183614



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>gb|AC122359.5| Mus musculus BAC clone RP23-421B1 from chromosome 6, complete sequence
          Length = 194338

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tgttcagcttccaaaagctg 39
              ||||||||||||||||||||
Sbjct: 127025 tgttcagcttccaaaagctg 127044



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>gb|AC117201.2| Mus musculus BAC clone RP23-216E6 from 16, complete sequence
          Length = 218980

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 134   ttgccaaatcttcaagcttcagtactct 161
             |||| |||| ||||||||||||||||||
Sbjct: 67886 ttgcaaaattttcaagcttcagtactct 67859



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>ref|NM_011674.2| Mus musculus UDP galactosyltransferase 8A (Ugt8a), mRNA
          Length = 3439

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  atagaataagcttacagtgc 292
            ||||||||||||||||||||
Sbjct: 2881 atagaataagcttacagtgc 2862



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>gb|AC138774.4| Homo sapiens BAC clone RP11-1320P3 from UL, complete sequence
          Length = 194050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     cttccaaaagctgtctggga 46
              ||||||||||||||||||||
Sbjct: 187964 cttccaaaagctgtctggga 187945



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>gb|BC016885.1| Mus musculus UDP galactosyltransferase 8A, mRNA (cDNA clone MGC:18397
            IMAGE:4223057), complete cds
          Length = 3439

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  atagaataagcttacagtgc 292
            ||||||||||||||||||||
Sbjct: 2881 atagaataagcttacagtgc 2862



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>gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, complete sequence
          Length = 229633

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   cagtcaaatctgagatgaag 131
             ||||||||||||||||||||
Sbjct: 95774 cagtcaaatctgagatgaag 95793



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>gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 184834

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   tttggatttgattccaagca 408
             ||||||||||||||||||||
Sbjct: 64239 tttggatttgattccaagca 64220



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>dbj|AK128994.1| Mus musculus cDNA fis, clone TRACH3026744, highly similar to
            2-hydroxyacylsphingosine 1-beta-galactosyltransferase
            precursor (EC 2.4.1.45)
          Length = 3598

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  atagaataagcttacagtgc 292
            ||||||||||||||||||||
Sbjct: 2880 atagaataagcttacagtgc 2861



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>gb|AC091683.53| Mus musculus strain C57BL/6J clone rp23-155l11 map 13, complete
             sequence
          Length = 236314

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tgttcagcttccaaaagctg 39
             ||||||||||||||||||||
Sbjct: 59060 tgttcagcttccaaaagctg 59079



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>dbj|AK137364.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630028M01
            product:UDP-glucuronosyltransferase 8, full insert
            sequence
          Length = 3600

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  atagaataagcttacagtgc 292
            ||||||||||||||||||||
Sbjct: 2887 atagaataagcttacagtgc 2868



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>dbj|AK137249.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530068O09
            product:unclassifiable, full insert sequence
          Length = 3310

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  tggatttgattccaagcacc 410
            ||||||||||||||||||||
Sbjct: 2048 tggatttgattccaagcacc 2029



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>dbj|AK144005.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530015P08
            product:UDP-glucuronosyltransferase 8, full insert
            sequence
          Length = 3671

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  atagaataagcttacagtgc 292
            ||||||||||||||||||||
Sbjct: 2887 atagaataagcttacagtgc 2868



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>dbj|AK162575.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630020O21 product:solute
           carrier family 1 (glial high affinity glutamate
           transporter), member 3, full insert sequence
          Length = 1356

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  gccatgtgttcagcttccaa 33
           ||||||||||||||||||||
Sbjct: 645 gccatgtgttcagcttccaa 626



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>gb|AC008846.7| Homo sapiens chromosome 5 clone CTD-2165G8, complete sequence
          Length = 92740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   caggtgtttggatttgattc 402
             ||||||||||||||||||||
Sbjct: 52504 caggtgtttggatttgattc 52485



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>dbj|AK163650.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
            full-length enriched library, clone:B830013E23
            product:UDP-glucuronosyltransferase 8, full insert
            sequence
          Length = 3392

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  atagaataagcttacagtgc 292
            ||||||||||||||||||||
Sbjct: 2848 atagaataagcttacagtgc 2829



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 299      cgcatcatatctagctagaa 318
                ||||||||||||||||||||
Sbjct: 28101887 cgcatcatatctagctagaa 28101868



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>gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, complete sequence
          Length = 155481

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttcagcttccaaaagctgtc 41
              ||||||||||||||||||||
Sbjct: 109269 ttcagcttccaaaagctgtc 109288



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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0604E01
          Length = 159049

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   cgcatcatatctagctagaa 318
             ||||||||||||||||||||
Sbjct: 99382 cgcatcatatctagctagaa 99363



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>gb|U48896.1|MMCGT6 Mus musculus UDP-galactose:ceramide galactosyltransferase (Cgt) gene,
            exon 6 and complete cds
          Length = 3009

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  atagaataagcttacagtgc 292
            ||||||||||||||||||||
Sbjct: 1553 atagaataagcttacagtgc 1534



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>emb|AL731831.17| Mouse DNA sequence from clone RP23-105O13 on chromosome 2, complete
             sequence
          Length = 218818

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   tggatttgattccaagcacc 410
             ||||||||||||||||||||
Sbjct: 27661 tggatttgattccaagcacc 27642



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>emb|AL731717.11| Mouse DNA sequence from clone RP23-92C4 on chromosome X, complete
             sequence
          Length = 234900

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggatttgattccaagcac 409
             ||||||||||||||||||||
Sbjct: 51491 ttggatttgattccaagcac 51510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,155,451
Number of Sequences: 3902068
Number of extensions: 3155451
Number of successful extensions: 55215
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55148
Number of HSP's gapped (non-prelim): 67
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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