ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009144.1| Triticum aestivum clone wl1n.pk0054.d8:fis, full ... 192 6e-46
2gb|AY107147.1| Zea mays PCO125081 mRNA sequence 165 1e-37
3gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory ... 163 5e-37
4dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
5dbj|AK099714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
6dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
7dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
9dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
10dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
11gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full ... 52 0.001
12ref|NM_202070.1| Arabidopsis thaliana ATRBOHB; calcium ion bindi... 48 0.021
13ref|NM_100780.3| Arabidopsis thaliana ATRBOHB; calcium ion bindi... 48 0.021
14emb|BX816700.1|CNS0ADX6 Arabidopsis thaliana Full-length cDNA Co... 48 0.021
15gb|BT005716.1| Arabidopsis thaliana clone RAFL14-97-K04 (R20129)... 48 0.021
16gb|BT009400.1| Triticum aestivum clone wlm96.pk044.g9:fis, full ... 46 0.085
17gb|AC121968.3| Mus musculus BAC clone RP24-272N4 from chromosome... 44 0.34
18dbj|AK039284.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 44 0.34
19dbj|AK043600.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 44 0.34
20ref|XM_955172.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.3
21ref|XM_327389.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.3
22gb|AC183550.3| Pan troglodytes BAC clone CH251-48C10 from chromo... 42 1.3
23ref|XM_720557.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.3
24gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete se... 42 1.3
25gb|AC100856.3| Homo sapiens chromosome 8, clone RP11-1001A23, co... 42 1.3
26gb|AC006777.1| Caenorhabditis elegans cosmid Y46H3D, complete se... 40 5.2
27gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
28gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
29gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, co... 40 5.2
30gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome... 40 5.2
31gb|AC146451.3| Pan troglodytes BAC clone RP43-1L21 from 7, compl... 40 5.2
32gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, com... 40 5.2
33gb|AC004020.1|HUAC004020 Homo sapiens Chromosome 16 BAC clone CI... 40 5.2
34ref|XM_721982.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.2
35gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete se... 40 5.2
36gb|AC117452.2| Homo sapiens 3 BAC RP11-341J3 (Roswell Park Cance... 40 5.2
37gb|AC026745.8| Homo sapiens chromosome 5 clone RP11-245L6, compl... 40 5.2
38gb|AC119729.5| Homo sapiens 3 BAC RP11-36I16 (Roswell Park Cance... 40 5.2
39gb|DQ378286.1| Drosophila virilis strain Tucson 15010-1001.10 fo... 40 5.2
40gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, comp... 40 5.2
41gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complet... 40 5.2
42gb|AC008835.6| Homo sapiens chromosome 5 clone CTD-2148E3, compl... 40 5.2
43gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosom... 40 5.2
44gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 5.2
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
46gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, comple... 40 5.2
47gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
48dbj|AP006656.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.2 
>gb|BT009144.1| Triticum aestivum clone wl1n.pk0054.d8:fis, full insert mRNA
           sequence
          Length = 876

 Score =  192 bits (97), Expect = 6e-46
 Identities = 181/209 (86%)
 Strand = Plus / Minus

                                                                       
Query: 179 tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
           ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 573 tagaagttctccttgtggaactcaaactttgtgttcgtcttgtgggtgaagtctgctgac 514

                                                                       
Query: 239 aactgccgcagctgcggcacaagaacaggctcaccacaatagaaaaccccgacacgctga 298
            ||||||| ||||| |||||||| ||||||||||| || |||||||| || || || || 
Sbjct: 513 cactgccgtagctgtggcacaaggacaggctcaccgcagtagaaaactccaacgcgttgg 454

                                                                       
Query: 299 ttctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggccgggcaaagtga 358
           ||||||||||| || || ||| | |||||||||||||||||||| || || || ||||| 
Sbjct: 453 ttctcatggttcactgcaacatgtttgaagacgcttcgccaattgggacgcgcgaagtgc 394

                                        
Query: 359 gtcttgacgctggttccggacaagatgtc 387
           |||||||| || ||||| |||||||||||
Sbjct: 393 gtcttgacactagttccagacaagatgtc 365
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>gb|AY107147.1| Zea mays PCO125081 mRNA sequence
          Length = 938

 Score =  165 bits (83), Expect = 1e-37
 Identities = 179/211 (84%)
 Strand = Plus / Minus

                                                                       
Query: 182 aagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgacaac 241
           |||||||||||||| ||||| ||||| || ||||||||||||||||| || || |||| |
Sbjct: 641 aagttctccttgtggaactcgaacttagtatttgtcttgtgggtgaagtccgctgacagc 582

                                                                       
Query: 242 tgccgcagctgcggcacaagaacaggctcaccacaatagaaaaccccgacacgctgattc 301
           ||||| ||||| |||||||| || ||||||||||| |||||||| ||||  || || |||
Sbjct: 581 tgccgtagctgtggcacaaggacgggctcaccacagtagaaaactccgatgcgttggttc 522

                                                                       
Query: 302 tcatggttgaccgcgacacgcttgaagacgcttcgccaattaggccgggcaaagtgagtc 361
           || ||||| || || ||| | |||||||||||||||||||| ||||| ||||| || |||
Sbjct: 521 tcgtggttcactgcaacatgtttgaagacgcttcgccaattcggccgtgcaaaatgcgtc 462

                                          
Query: 362 ttgacgctggttccggacaagatgtcaactc 392
           ||||| || ||||| ||||||||||| ||||
Sbjct: 461 ttgacactagttccagacaagatgtcgactc 431
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>gb|AY603975.1| Oryza sativa (indica cultivar-group) respiratory burst oxidase
            protein B (rbohB) mRNA, complete cds
          Length = 3334

 Score =  163 bits (82), Expect = 5e-37
 Identities = 175/206 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
            ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 3012 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 2953

                                                                        
Query: 239  aactgccgcagctgcggcacaagaacaggctcaccacaatagaaaaccccgacacgctga 298
            |||||||  || || || || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 2952 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2893

                                                                        
Query: 299  ttctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggccgggcaaagtga 358
            ||||||||| ||||||| ||   |||||||||||||||||||||||| || || || || 
Sbjct: 2892 ttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaatgg 2833

                                      
Query: 359  gtcttgacgctggttccggacaagat 384
            ||||| || || ||||| ||||||||
Sbjct: 2832 gtcttcacactagttcccgacaagat 2807
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>dbj|AK121916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C16, full
            insert sequence
          Length = 3255

 Score =  163 bits (82), Expect = 5e-37
 Identities = 175/206 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
            ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 3085 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 3026

                                                                        
Query: 239  aactgccgcagctgcggcacaagaacaggctcaccacaatagaaaaccccgacacgctga 298
            |||||||  || || || || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 3025 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2966

                                                                        
Query: 299  ttctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggccgggcaaagtga 358
            ||||||||| ||||||| ||   |||||||||||||||||||||||| || || || || 
Sbjct: 2965 ttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaatgg 2906

                                      
Query: 359  gtcttgacgctggttccggacaagat 384
            ||||| || || ||||| ||||||||
Sbjct: 2905 gtcttcacactagttcccgacaagat 2880
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>dbj|AK099714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G19, full
            insert sequence
          Length = 3731

 Score =  163 bits (82), Expect = 5e-37
 Identities = 175/206 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
            ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 3604 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 3545

                                                                        
Query: 239  aactgccgcagctgcggcacaagaacaggctcaccacaatagaaaaccccgacacgctga 298
            |||||||  || || || || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 3544 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 3485

                                                                        
Query: 299  ttctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggccgggcaaagtga 358
            ||||||||| ||||||| ||   |||||||||||||||||||||||| || || || || 
Sbjct: 3484 ttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaatgg 3425

                                      
Query: 359  gtcttgacgctggttccggacaagat 384
            ||||| || || ||||| ||||||||
Sbjct: 3424 gtcttcacactagttcccgacaagat 3399
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>dbj|AK065117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O12, full
            insert sequence
          Length = 3198

 Score =  163 bits (82), Expect = 5e-37
 Identities = 175/206 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
            ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 3088 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 3029

                                                                        
Query: 239  aactgccgcagctgcggcacaagaacaggctcaccacaatagaaaaccccgacacgctga 298
            |||||||  || || || || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 3028 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2969

                                                                        
Query: 299  ttctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggccgggcaaagtga 358
            ||||||||| ||||||| ||   |||||||||||||||||||||||| || || || || 
Sbjct: 2968 ttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaatgg 2909

                                      
Query: 359  gtcttgacgctggttccggacaagat 384
            ||||| || || ||||| ||||||||
Sbjct: 2908 gtcttcacactagttcccgacaagat 2883
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>dbj|AK060770.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B03, full
            insert sequence
          Length = 2978

 Score =  163 bits (82), Expect = 5e-37
 Identities = 175/206 (84%)
 Strand = Plus / Minus

                                                                        
Query: 179  tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
            ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 2725 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 2666

                                                                        
Query: 239  aactgccgcagctgcggcacaagaacaggctcaccacaatagaaaaccccgacacgctga 298
            |||||||  || || || || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 2665 aactgccttagttggggaaccagcacaggctcaccacagtagaacacaccgacgcgctgg 2606

                                                                        
Query: 299  ttctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggccgggcaaagtga 358
            ||||||||| ||||||| ||   |||||||||||||||||||||||| || || || || 
Sbjct: 2605 ttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggtcgtgcgaaatgg 2546

                                      
Query: 359  gtcttgacgctggttccggacaagat 384
            ||||| || || ||||| ||||||||
Sbjct: 2545 gtcttcacactagttcccgacaagat 2520
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 4e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                            
Query: 179      tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
                ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 14604500 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 14604559

                                                            
Query: 239      aactgccgcagctgcggcacaagaacaggctcaccacaatagaa 282
                |||||||  || || || || || |||||||||||||| |||||
Sbjct: 14604560 aactgccttagttggggaaccagcacaggctcaccacagtagaa 14604603



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                            
Query: 287      ccgacacgctgattctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggc 346
                ||||| ||||| ||||||||| ||||||| ||   |||||||||||||||||||||||| 
Sbjct: 14604691 ccgacgcgctggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggt 14604750

                                                      
Query: 347      cgggcaaagtgagtcttgacgctggttccggacaagat 384
                || || || || ||||| || || ||||| ||||||||
Sbjct: 14604751 cgtgcgaaatgggtcttcacactagttcccgacaagat 14604788
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>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1164G11
          Length = 142699

 Score =  103 bits (52), Expect = 4e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                         
Query: 179   tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
             ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 85877 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 85936

                                                         
Query: 239   aactgccgcagctgcggcacaagaacaggctcaccacaatagaa 282
             |||||||  || || || || || |||||||||||||| |||||
Sbjct: 85937 aactgccttagttggggaaccagcacaggctcaccacagtagaa 85980



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                         
Query: 287   ccgacacgctgattctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggc 346
             ||||| ||||| ||||||||| ||||||| ||   |||||||||||||||||||||||| 
Sbjct: 86068 ccgacgcgctggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggt 86127

                                                   
Query: 347   cgggcaaagtgagtcttgacgctggttccggacaagat 384
             || || || || ||||| || || ||||| ||||||||
Sbjct: 86128 cgtgcgaaatgggtcttcacactagttcccgacaagat 86165
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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0514H03
          Length = 167230

 Score =  103 bits (52), Expect = 4e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                          
Query: 179    tagaagttctccttgtgaaactcaaactttgtgtttgtcttgtgggtgaaatctgccgac 238
              ||||||||||||||||| || |||||  |||||||||||||||||||||||||||| |||
Sbjct: 163813 tagaagttctccttgtggaaatcaaatcttgtgtttgtcttgtgggtgaaatctgctgac 163872

                                                          
Query: 239    aactgccgcagctgcggcacaagaacaggctcaccacaatagaa 282
              |||||||  || || || || || |||||||||||||| |||||
Sbjct: 163873 aactgccttagttggggaaccagcacaggctcaccacagtagaa 163916



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                          
Query: 287    ccgacacgctgattctcatggttgaccgcgacacgcttgaagacgcttcgccaattaggc 346
              ||||| ||||| ||||||||| ||||||| ||   |||||||||||||||||||||||| 
Sbjct: 164004 ccgacgcgctggttctcatggctgaccgcaaccttcttgaagacgcttcgccaattaggt 164063

                                                    
Query: 347    cgggcaaagtgagtcttgacgctggttccggacaagat 384
              || || || || ||||| || || ||||| ||||||||
Sbjct: 164064 cgtgcgaaatgggtcttcacactagttcccgacaagat 164101
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>gb|BT009119.1| Triticum aestivum clone wl1n.pk0005.c8:fis, full insert mRNA
           sequence
          Length = 543

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 178 ctagaagttctccttgtgaaactcaaactttgtgtttgtctt 219
           |||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 377 ctagaagttctccttgtggaactcgaacttggtgttggtctt 336
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>ref|NM_202070.1| Arabidopsis thaliana ATRBOHB; calcium ion binding / oxidoreductase
            AT1G09090 (ATRBOHB) transcript variant AT1G09090.2 mRNA,
            complete cds
          Length = 2627

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 271  accacaatagaaaaccccgacacgctgattctcatggttgaccgcgacacgcttgaagac 330
            |||||| ||||||||||| || || |||||  | |||||||| |||||  ||||||||||
Sbjct: 2443 accacagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagac 2384

                        
Query: 331  gcttcgccaatt 342
             || ||||||||
Sbjct: 2383 actacgccaatt 2372
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>ref|NM_100780.3| Arabidopsis thaliana ATRBOHB; calcium ion binding / oxidoreductase
            AT1G09090 (ATRBOHB) transcript variant AT1G09090.1 mRNA,
            complete cds
          Length = 2701

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 271  accacaatagaaaaccccgacacgctgattctcatggttgaccgcgacacgcttgaagac 330
            |||||| ||||||||||| || || |||||  | |||||||| |||||  ||||||||||
Sbjct: 2517 accacagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagac 2458

                        
Query: 331  gcttcgccaatt 342
             || ||||||||
Sbjct: 2457 actacgccaatt 2446
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>emb|BX816700.1|CNS0ADX6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH63ZH03 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2590

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 271  accacaatagaaaaccccgacacgctgattctcatggttgaccgcgacacgcttgaagac 330
            |||||| ||||||||||| || || |||||  | |||||||| |||||  ||||||||||
Sbjct: 2426 accacagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagac 2367

                        
Query: 331  gcttcgccaatt 342
             || ||||||||
Sbjct: 2366 actacgccaatt 2355
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>gb|BT005716.1| Arabidopsis thaliana clone RAFL14-97-K04 (R20129) putative
            respiratory burst oxidase protein B (At1g09090) mRNA,
            complete cds
          Length = 2721

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 271  accacaatagaaaaccccgacacgctgattctcatggttgaccgcgacacgcttgaagac 330
            |||||| ||||||||||| || || |||||  | |||||||| |||||  ||||||||||
Sbjct: 2518 accacagtagaaaaccccaactcgttgattgacgtggttgactgcgacgtgcttgaagac 2459

                        
Query: 331  gcttcgccaatt 342
             || ||||||||
Sbjct: 2458 actacgccaatt 2447
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>gb|BT009400.1| Triticum aestivum clone wlm96.pk044.g9:fis, full insert mRNA sequence
          Length = 1993

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 185  ttctccttgtgaaactcaaactttgtgtttgtctt 219
            ||||||||||| ||||| || ||||||||||||||
Sbjct: 1750 ttctccttgtggaactcgaattttgtgtttgtctt 1716
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>gb|AC121968.3| Mus musculus BAC clone RP24-272N4 from chromosome 6, complete sequence
          Length = 193207

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 202   aaactttgtgtttgtcttgtgg 223
             ||||||||||||||||||||||
Sbjct: 40211 aaactttgtgtttgtcttgtgg 40190
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>dbj|AK039284.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330015G07
           product:unclassifiable, full insert sequence
          Length = 2201

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 202 aaactttgtgtttgtcttgtgg 223
           ||||||||||||||||||||||
Sbjct: 508 aaactttgtgtttgtcttgtgg 487
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>dbj|AK043600.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830011K09
           product:unclassifiable, full insert sequence
          Length = 1791

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 202 aaactttgtgtttgtcttgtgg 223
           ||||||||||||||||||||||
Sbjct: 718 aaactttgtgtttgtcttgtgg 697
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>ref|XM_955172.1| Neurospora crassa OR74A hypothetical protein (NCU07104.1) partial
           mRNA
          Length = 648

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 230 tctgccgacaactgccgcagc 250
           |||||||||||||||||||||
Sbjct: 346 tctgccgacaactgccgcagc 366
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>ref|XM_327389.1| Neurospora crassa OR74A hypothetical protein (NCU07104.1) partial
           mRNA
          Length = 648

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 230 tctgccgacaactgccgcagc 250
           |||||||||||||||||||||
Sbjct: 346 tctgccgacaactgccgcagc 366
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>gb|AC183550.3| Pan troglodytes BAC clone CH251-48C10 from chromosome 7, complete
             sequence
          Length = 163417

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    cattttatttcccacctttac 104
             |||||||||||||||||||||
Sbjct: 52451 cattttatttcccacctttac 52431
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>ref|XM_720557.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05218)
           partial mRNA
          Length = 1872

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  ctttacaaaataataatacaa 119
           |||||||||||||||||||||
Sbjct: 449 ctttacaaaataataatacaa 469
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>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence
          Length = 117113

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   tttacaaaataataatacaac 120
             |||||||||||||||||||||
Sbjct: 35316 tttacaaaataataatacaac 35296
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>gb|AC100856.3| Homo sapiens chromosome 8, clone RP11-1001A23, complete sequence
          Length = 182933

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 32     ttaacaacatagagtaaacaa 52
              |||||||||||||||||||||
Sbjct: 101357 ttaacaacatagagtaaacaa 101337
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>gb|AC006777.1| Caenorhabditis elegans cosmid Y46H3D, complete sequence
          Length = 27089

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    ggcaaaaccactcccatttt 89
             ||||||||||||||||||||
Sbjct: 19971 ggcaaaaccactcccatttt 19990
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>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21,
              complete sequence
          Length = 146539

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     attttatttcccacctttac 104
              ||||||||||||||||||||
Sbjct: 130982 attttatttcccacctttac 130963
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>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10,
              complete sequence
          Length = 157609

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     attttatttcccacctttac 104
              ||||||||||||||||||||
Sbjct: 156975 attttatttcccacctttac 156956
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>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome
          Length = 706569

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    tttacaaaataataatacaa 119
              ||||||||||||||||||||
Sbjct: 534673 tttacaaaataataatacaa 534654
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>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence
          Length = 208880

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   actcaaactttgtgtttgtcttgt 221
             ||||||| ||||||||||||||||
Sbjct: 64986 actcaaattttgtgtttgtcttgt 64963
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>gb|AC146451.3| Pan troglodytes BAC clone RP43-1L21 from 7, complete sequence
          Length = 161524

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  aatacaacccatacaattca 132
            ||||||||||||||||||||
Sbjct: 8205 aatacaacccatacaattca 8224
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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    atactccttaacaacataga 44
             ||||||||||||||||||||
Sbjct: 98600 atactccttaacaacataga 98581
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>gb|AC004020.1|HUAC004020 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-319E8, complete sequence
          Length = 153773

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 93     tcccacctttacaaaataataata 116
              |||||||| |||||||||||||||
Sbjct: 143029 tcccacctatacaaaataataata 143052
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>ref|XM_721982.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06423)
            partial mRNA
          Length = 4384

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  atagacatattcttatacaa 168
            ||||||||||||||||||||
Sbjct: 3131 atagacatattcttatacaa 3150
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>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence
          Length = 135248

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgaagcatggcatagacata 157
             ||||||||||||||||||||
Sbjct: 73693 tgaagcatggcatagacata 73674
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>gb|AC117452.2| Homo sapiens 3 BAC RP11-341J3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193285

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aattcacctgatgaagcatg 146
              ||||||||||||||||||||
Sbjct: 142279 aattcacctgatgaagcatg 142260
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>gb|AC026745.8| Homo sapiens chromosome 5 clone RP11-245L6, complete sequence
          Length = 128963

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 254   ggcacaagaacaggctcaccacaa 277
             |||||||||| |||||||||||||
Sbjct: 70355 ggcacaagaaaaggctcaccacaa 70378
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>gb|AC119729.5| Homo sapiens 3 BAC RP11-36I16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 125847

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  aattcacctgatgaagcatg 146
            ||||||||||||||||||||
Sbjct: 1357 aattcacctgatgaagcatg 1338
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>gb|DQ378286.1| Drosophila virilis strain Tucson 15010-1001.10 fosmids 22L1 and
            42E12, complete sequence
          Length = 68774

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  aaaaccccgacacgctgatt 300
            ||||||||||||||||||||
Sbjct: 2488 aaaaccccgacacgctgatt 2507
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>gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, complete sequence
          Length = 74705

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aatacaacccatacaattca 132
             ||||||||||||||||||||
Sbjct: 18762 aatacaacccatacaattca 18743
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>gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complete sequence
          Length = 169483

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     cacctttacaaaataataat 115
              ||||||||||||||||||||
Sbjct: 144467 cacctttacaaaataataat 144448
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>gb|AC008835.6| Homo sapiens chromosome 5 clone CTD-2148E3, complete sequence
          Length = 129046

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    aatacaacccatacaattca 132
              ||||||||||||||||||||
Sbjct: 116603 aatacaacccatacaattca 116584
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>gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosome 7, complete sequence
          Length = 199337

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   actcaaactttgtgtttgtcttgt 221
             ||||||| ||||||||||||||||
Sbjct: 73105 actcaaattttgtgtttgtcttgt 73128
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     accgcgacacgcttgaagac 330
               ||||||||||||||||||||
Sbjct: 1729469 accgcgacacgcttgaagac 1729450
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 85       attttatttcccacctttac 104
                ||||||||||||||||||||
Sbjct: 17402200 attttatttcccacctttac 17402181
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>gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, complete sequence
          Length = 145918

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 93     tcccacctttacaaaataataata 116
              |||||||| |||||||||||||||
Sbjct: 108062 tcccacctatacaaaataataata 108039
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 85       attttatttcccacctttac 104
                ||||||||||||||||||||
Sbjct: 17495910 attttatttcccacctttac 17495891
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>dbj|AP006656.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05H03, TM0342a,
             complete sequence
          Length = 57652

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tagaagttctccttgtgaaa 198
             ||||||||||||||||||||
Sbjct: 34235 tagaagttctccttgtgaaa 34216


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,002,881
Number of Sequences: 3902068
Number of extensions: 4002881
Number of successful extensions: 79139
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78960
Number of HSP's gapped (non-prelim): 179
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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