ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477047.1| Oryza sativa (japonica cultivar-group), mRNA 125 1e-25
2dbj|AK103882.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6gb|AC114667.12| Mus musculus chromosome 1, clone RP24-175L10, co... 42 1.4
7gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosom... 42 1.4
8gb|AC141889.4| Mus musculus BAC clone RP23-434P15 from chromosom... 42 1.4
9emb|AL929204.7| Zebrafish DNA sequence from clone CH211-138E4, c... 42 1.4
10gb|DQ289495.1| Synthetic construct EpoE (epoE) gene, complete cds 42 1.4
11ref|NM_125910.3| Arabidopsis thaliana ACX2 (ACYL-COA OXIDASE 2);... 40 5.5
12ref|NM_001037068.1| Arabidopsis thaliana ACX2 (ACYL-COA OXIDASE ... 40 5.5
13ref|NM_129932.3| Arabidopsis thaliana kinase AT2G43700 mRNA, com... 40 5.5
14gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, comple... 40 5.5
15gb|AC073203.9| Homo sapiens BAC clone RP11-313M4 from 7, complet... 40 5.5
16gb|AC142311.1| Pan troglodytes BAC clone RP43-47I3 from 7, compl... 40 5.5
17gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswel... 40 5.5
18emb|AL662855.19| Mouse DNA sequence from clone RP23-388J21 on ch... 40 5.5
19gb|AC090559.7| Homo sapiens chromosome 11, clone RP11-750H9, com... 40 5.5
20ref|NM_141005.1| Drosophila melanogaster CG3618-RA (CG3618), mRNA 40 5.5
21gb|AC002333.3| Arabidopsis thaliana chromosome 2 clone F18O19 ma... 40 5.5
22gb|AY091779.1| Arabidopsis thaliana AT5g65110/MQN23_4 mRNA sequence 40 5.5
23gb|AY074631.1| Arabidopsis thaliana At2g43700/F18O19.19 mRNA, co... 40 5.5
24gb|AY058558.1| Drosophila melanogaster LD24894 full length cDNA 40 5.5
25gb|AF057043.1|AF057043 Arabidopsis thaliana acyl-CoA oxidase (AC... 40 5.5
26emb|BX820357.1|CNS0AAG4 Arabidopsis thaliana Full-length cDNA Co... 40 5.5
27emb|BX818912.1|CNS0A8VP Arabidopsis thaliana Full-length cDNA Co... 40 5.5
28emb|BX833427.1|CNS0A1Q3 Arabidopsis thaliana Full-length cDNA Co... 40 5.5
29dbj|AB013395.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.5
30emb|CR936278.9| Zebrafish DNA sequence from clone CH211-46O5 in ... 40 5.5
31gb|AY110011.1| Zea mays CL57927_1 mRNA sequence 40 5.5
32gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73... 40 5.5 
>ref|XM_477047.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5025

 Score =  125 bits (63), Expect = 1e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                        
Query: 294  tactccattgccttctgcttcacatgctcgattctttcttcatcgccctgagccttctca 353
            ||||||| |||||||||||| ||||||||||||||||| ||||| || || | |||||||
Sbjct: 5003 tactccagtgccttctgctttacatgctcgattctttcctcatcaccttgcgacttctca 4944

                                                                   
Query: 354  tatcgtaggtatttcttgaacaagaacttcatcttttttggaggaagactaaggc 408
            |||   ||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 4943 tattccaggtacttcttgaataaaaacttcatcttttttggaggaagactaaggc 4889
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>dbj|AK103882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149P22, full
            insert sequence
          Length = 2459

 Score =  125 bits (63), Expect = 1e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                        
Query: 294  tactccattgccttctgcttcacatgctcgattctttcttcatcgccctgagccttctca 353
            ||||||| |||||||||||| ||||||||||||||||| ||||| || || | |||||||
Sbjct: 2048 tactccagtgccttctgctttacatgctcgattctttcctcatcaccttgcgacttctca 1989

                                                                   
Query: 354  tatcgtaggtatttcttgaacaagaacttcatcttttttggaggaagactaaggc 408
            |||   ||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 1988 tattccaggtacttcttgaataaaaacttcatcttttttggaggaagactaaggc 1934
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                           
Query: 294     tactccattgccttctgcttcacatgctcgattctttcttcatcgccctgagccttctca 353
               ||||||| |||||||||||| ||||||||||||||||| ||||| || || | |||||||
Sbjct: 5588876 tactccagtgccttctgctttacatgctcgattctttcctcatcaccttgcgacttctca 5588817

                                   
Query: 354     tatcgtaggtatttcttgaa 373
               |||   ||||| ||||||||
Sbjct: 5588816 tattccaggtacttcttgaa 5588797



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                            
Query: 380     cttcatcttttttggaggaagactaaggc 408
               |||||||||||||||||||||||||||||
Sbjct: 5588354 cttcatcttttttggaggaagactaaggc 5588326
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0081K20
          Length = 117287

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                          
Query: 294    tactccattgccttctgcttcacatgctcgattctttcttcatcgccctgagccttctca 353
              ||||||| |||||||||||| ||||||||||||||||| ||||| || || | |||||||
Sbjct: 101961 tactccagtgccttctgctttacatgctcgattctttcctcatcaccttgcgacttctca 101902

                                  
Query: 354    tatcgtaggtatttcttgaa 373
              |||   ||||| ||||||||
Sbjct: 101901 tattccaggtacttcttgaa 101882



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                           
Query: 380    cttcatcttttttggaggaagactaaggc 408
              |||||||||||||||||||||||||||||
Sbjct: 101439 cttcatcttttttggaggaagactaaggc 101411
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>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0431A02
          Length = 165038

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                         
Query: 294   tactccattgccttctgcttcacatgctcgattctttcttcatcgccctgagccttctca 353
             ||||||| |||||||||||| ||||||||||||||||| ||||| || || | |||||||
Sbjct: 50568 tactccagtgccttctgctttacatgctcgattctttcctcatcaccttgcgacttctca 50509

                                 
Query: 354   tatcgtaggtatttcttgaa 373
             |||   ||||| ||||||||
Sbjct: 50508 tattccaggtacttcttgaa 50489



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                          
Query: 380   cttcatcttttttggaggaagactaaggc 408
             |||||||||||||||||||||||||||||
Sbjct: 50046 cttcatcttttttggaggaagactaaggc 50018
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>gb|AC114667.12| Mus musculus chromosome 1, clone RP24-175L10, complete sequence
          Length = 171306

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 169   agcagcatttcaagaaggtgagctg 193
             |||||||||||| ||||||||||||
Sbjct: 64750 agcagcatttcaggaaggtgagctg 64774
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>gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosome 3, complete sequence
          Length = 230133

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    ctgcagccctgactggcacat 117
             |||||||||||||||||||||
Sbjct: 68889 ctgcagccctgactggcacat 68909
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>gb|AC141889.4| Mus musculus BAC clone RP23-434P15 from chromosome 3, complete sequence
          Length = 186264

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     ctgcagccctgactggcacat 117
              |||||||||||||||||||||
Sbjct: 135481 ctgcagccctgactggcacat 135501
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>emb|AL929204.7| Zebrafish DNA sequence from clone CH211-138E4, complete sequence
          Length = 157519

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     agcaaaacatatatcatcaca 51
              |||||||||||||||||||||
Sbjct: 130160 agcaaaacatatatcatcaca 130180
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>gb|DQ289495.1| Synthetic construct EpoE (epoE) gene, complete cds
          Length = 11460

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  cacattctctgccacaatcacatcg 137
            ||||||| |||||||||||||||||
Sbjct: 8820 cacattcgctgccacaatcacatcg 8796
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>ref|NM_125910.3| Arabidopsis thaliana ACX2 (ACYL-COA OXIDASE 2); acyl-CoA oxidase
            AT5G65110 (ACX2) transcript variant AT5G65110.1 mRNA,
            complete cds
          Length = 2277

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   caaaacatatatcatcacaa 52
            ||||||||||||||||||||
Sbjct: 2108 caaaacatatatcatcacaa 2127
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>ref|NM_001037068.1| Arabidopsis thaliana ACX2 (ACYL-COA OXIDASE 2); acyl-CoA oxidase
            AT5G65110 (ACX2) transcript variant AT5G65110.2 mRNA,
            complete cds
          Length = 2403

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   caaaacatatatcatcacaa 52
            ||||||||||||||||||||
Sbjct: 2229 caaaacatatatcatcacaa 2248
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>ref|NM_129932.3| Arabidopsis thaliana kinase AT2G43700 mRNA, complete cds
          Length = 2355

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  agctgcagatcaccatccaagatc 212
            ||||||||||||||| ||||||||
Sbjct: 1865 agctgcagatcaccacccaagatc 1842
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>gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, complete sequence
          Length = 222288

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   ctccattgccttctgcttca 315
             ||||||||||||||||||||
Sbjct: 24879 ctccattgccttctgcttca 24860
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>gb|AC073203.9| Homo sapiens BAC clone RP11-313M4 from 7, complete sequence
          Length = 150227

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   aggtgagctgcagatcacca 203
             ||||||||||||||||||||
Sbjct: 28360 aggtgagctgcagatcacca 28341
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>gb|AC142311.1| Pan troglodytes BAC clone RP43-47I3 from 7, complete sequence
          Length = 166861

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    aggtgagctgcagatcacca 203
              ||||||||||||||||||||
Sbjct: 146640 aggtgagctgcagatcacca 146659
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>gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswell Park Cancer
             Institute Drosophila BAC library) complete sequence
          Length = 199396

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   cttctgcttcacatgctcga 324
             ||||||||||||||||||||
Sbjct: 44823 cttctgcttcacatgctcga 44842
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>emb|AL662855.19| Mouse DNA sequence from clone RP23-388J21 on chromosome 11, complete
             sequence
          Length = 157088

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   cctctgattagcagcatttc 179
             ||||||||||||||||||||
Sbjct: 51418 cctctgattagcagcatttc 51437
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>gb|AC090559.7| Homo sapiens chromosome 11, clone RP11-750H9, complete sequence
          Length = 202539

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    acaagaacttcatctttttt 392
              ||||||||||||||||||||
Sbjct: 176518 acaagaacttcatctttttt 176499
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>ref|NM_141005.1| Drosophila melanogaster CG3618-RA (CG3618), mRNA
          Length = 2586

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  cttctgcttcacatgctcga 324
            ||||||||||||||||||||
Sbjct: 2014 cttctgcttcacatgctcga 1995
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>gb|AC002333.3| Arabidopsis thaliana chromosome 2 clone F18O19 map CIC10F02, complete
             sequence
          Length = 98734

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 189   agctgcagatcaccatccaagatc 212
             ||||||||||||||| ||||||||
Sbjct: 55528 agctgcagatcaccacccaagatc 55551
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>gb|AY091779.1| Arabidopsis thaliana AT5g65110/MQN23_4 mRNA sequence
          Length = 3816

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   caaaacatatatcatcacaa 52
            ||||||||||||||||||||
Sbjct: 3688 caaaacatatatcatcacaa 3707
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>gb|AY074631.1| Arabidopsis thaliana At2g43700/F18O19.19 mRNA, complete cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  agctgcagatcaccatccaagatc 212
            ||||||||||||||| ||||||||
Sbjct: 1865 agctgcagatcaccacccaagatc 1842
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>gb|AY058558.1| Drosophila melanogaster LD24894 full length cDNA
          Length = 2506

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  cttctgcttcacatgctcga 324
            ||||||||||||||||||||
Sbjct: 1916 cttctgcttcacatgctcga 1897
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>gb|AF057043.1|AF057043 Arabidopsis thaliana acyl-CoA oxidase (ACX2) mRNA, complete cds
          Length = 2267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   caaaacatatatcatcacaa 52
            ||||||||||||||||||||
Sbjct: 2098 caaaacatatatcatcacaa 2117
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>emb|BX820357.1|CNS0AAG4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH25ZG02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2208

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  agctgcagatcaccatccaagatc 212
            ||||||||||||||| ||||||||
Sbjct: 1914 agctgcagatcaccacccaagatc 1891
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>emb|BX818912.1|CNS0A8VP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1389

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 189 agctgcagatcaccatccaagatc 212
           ||||||||||||||| ||||||||
Sbjct: 899 agctgcagatcaccacccaagatc 876
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>emb|BX833427.1|CNS0A1Q3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL54ZD05 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 2201

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   caaaacatatatcatcacaa 52
            ||||||||||||||||||||
Sbjct: 2108 caaaacatatatcatcacaa 2127
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>dbj|AB013395.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23
          Length = 86064

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   caaaacatatatcatcacaa 52
            ||||||||||||||||||||
Sbjct: 7772 caaaacatatatcatcacaa 7753
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>emb|CR936278.9| Zebrafish DNA sequence from clone CH211-46O5 in linkage group 19,
             complete sequence
          Length = 146216

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aatcatctgtcttccctatt 27
             ||||||||||||||||||||
Sbjct: 83211 aatcatctgtcttccctatt 83230
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>gb|AY110011.1| Zea mays CL57927_1 mRNA sequence
          Length = 776

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 363 tatttcttgaacaagaacttcatc 386
           ||||||||||||||||||| ||||
Sbjct: 332 tatttcttgaacaagaactgcatc 355
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>gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73 of 83 of the complete
              sequence
          Length = 323816

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    cttctgcttcacatgctcga 324
              ||||||||||||||||||||
Sbjct: 185131 cttctgcttcacatgctcga 185150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,242,565
Number of Sequences: 3902068
Number of extensions: 4242565
Number of successful extensions: 82504
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82440
Number of HSP's gapped (non-prelim): 64
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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