ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45f09 |
|---|---|
| Clone Library Name | barley_pub |
>ATU2_YEAST (P38995) Copper-transporting ATPase (EC 3.6.3.4) (Cu(2+)-ATPase)| Length = 1004 Score = 32.3 bits (72), Expect = 0.28 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 6 ERNRSQLTTCYNLQGTIE-RTVTHHDDTRTWQTTILMSTSLQVTLILLHPA*PFLW 170 ER + T NL T + R ++ D+ R W+ + ST L + +LL+ P +W Sbjct: 224 ERTGYKFTVFSNLDNTTQLRLLSKEDEIRFWKKNSIKSTLLAIICMLLYMIVPMMW 279
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 186 TSDSKCTQSEIQGSTGTGQR*AGLSTDELETDEAQQHGCQSSSPAAKQSRVQI 344 + S C QSEI + GQ L TD D +H +S + + SR ++ Sbjct: 854 SQSSHCGQSEIGKTENQGQNRHSLGTDRTRRDSYVEHSGRSGKLSQQNSREEV 906
>MYPC3_HUMAN (Q14896) Myosin-binding protein C, cardiac-type (Cardiac MyBP-C)| (C-protein, cardiac muscle isoform) Length = 1274 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -1 Query: 336 LWIASQPEKMTDSRVVVPHLFQVHQLT 256 +W+ + E + DSR+ V H+ +VH+LT Sbjct: 576 VWLKNGKELVPDSRIKVSHIGRVHKLT 602
>ZBTB5_MOUSE (Q7TQG0) Zinc finger and BTB domain-containing protein 5| (Transcription factor ZNF-POZ) Length = 670 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 92 CSCIIVMGNRSFDCTL*VVACC 27 C C+IV+GNR F V+A C Sbjct: 24 CDCVIVVGNRHFKAHRSVLAAC 45
>ZBTB5_HUMAN (O15062) Zinc finger and BTB domain-containing protein 5| Length = 677 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 92 CSCIIVMGNRSFDCTL*VVACC 27 C C+IV+GNR F V+A C Sbjct: 24 CDCVIVVGNRHFKAHRSVLAAC 45
>YGI8_YEAST (P53151) Hypothetical 14.2 kDa protein in MFAL2-MAD1 intergenic| region Length = 121 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -3 Query: 151 GCNSISVTCRLVDIRI 104 GCNS+SV C L D+R+ Sbjct: 100 GCNSLSVVCFLADLRV 115
>PBF_MAIZE (O24463) Dof zinc finger protein PBF (Prolamin box-binding factor)| Length = 328 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 175 TNEVLQIQSVPNQRFKALQEQGNDKQACQLMNLKQMRHNN 294 TN+ Q+ P Q KA+ + N+ L+NL +HNN Sbjct: 273 TNDARQLVG-PQQDNKAIMKSSNNNNGVSLLNLYWNKHNN 311
>TSYL3_HUMAN (Q9H489) Testis-specific Y-encoded-like protein 3 (TSPY-like 3)| Length = 355 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +1 Query: 214 RFKALQEQGNDKQACQLMNL--KQMRHNNTAVSHLLRLRSNPEFK 342 + A+ ++ C LMNL +++RH+ T R SNP F+ Sbjct: 205 QLSAMISPRDEDMLCYLMNLEVRELRHSRTGCKFKFRFWSNPYFQ 249
>MYPC3_MOUSE (O70468) Myosin-binding protein C, cardiac-type (Cardiac MyBP-C)| (C-protein, cardiac muscle isoform) Length = 1270 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = -1 Query: 336 LWIASQPEKMTDSRVVVPHLFQVHQLT 256 +W+ + E + D+R+ V H+ +VH+LT Sbjct: 572 VWLKNGKELVPDNRIKVSHIGRVHKLT 598
>LEU2_PROMT (Q46HB8) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 469 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 196 QSVPNQRFKALQEQGNDKQACQLMNLK 276 +++PN F EQ K AC+ MNLK Sbjct: 303 ETIPNPEFLPKNEQQIAKDACKYMNLK 329
>MUTL_NEIMB (Q9JYT2) DNA mismatch repair protein mutL| Length = 658 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +2 Query: 137 NTVTPSLTLFVDEPMKYFRFKVYPIRDSRLYRNRATISRLV 259 N +TP+ LF+D P + V+P + +R+ + +LV Sbjct: 277 NALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSQQVHQLV 317
>MUTL_NEIMA (Q9JTS2) DNA mismatch repair protein mutL| Length = 658 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +2 Query: 137 NTVTPSLTLFVDEPMKYFRFKVYPIRDSRLYRNRATISRLV 259 N +TP+ LF+D P + V+P + +R+ + +LV Sbjct: 277 NALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSRQVHQLV 317
>POLG_DEN27 (P29991) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3391 Score = 27.3 bits (59), Expect = 9.1 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Frame = +3 Query: 90 TWQTTILMSTSLQVTLILLHPA*PFLWMNQ*STSDSKCTQS----EIQGSTGTGQR*AGL 257 TW STSL VTL+L+ L++ +DS C S E++ +G Sbjct: 744 TWIGMNSRSTSLSVTLVLVGIV--TLYLGVMVQADSGCVVSWKNKELKCGSGI------F 795 Query: 258 STDELETDEAQQHGCQSSSPAAKQSRVQ------ICGVASKT 365 TD + T +Q+ Q SP+ S +Q ICG+ S T Sbjct: 796 ITDNVHT-WTEQYKFQPESPSKLASAIQKAHEEDICGIRSVT 836
>POLG_DEN26 (P29990) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3391 Score = 27.3 bits (59), Expect = 9.1 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Frame = +3 Query: 90 TWQTTILMSTSLQVTLILLHPA*PFLWMNQ*STSDSKCTQS----EIQGSTGTGQR*AGL 257 TW STSL VTL+L+ L++ +DS C S E++ +G Sbjct: 744 TWIGMNSRSTSLSVTLVLVGIV--TLYLGVMVQADSGCVVSWKNKELKCGSGI------F 795 Query: 258 STDELETDEAQQHGCQSSSPAAKQSRVQ------ICGVASKT 365 TD + T +Q+ Q SP+ S +Q ICG+ S T Sbjct: 796 ITDNVHT-WTEQYKFQPESPSKLASAIQKAHEEGICGIRSVT 836 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,279,742 Number of Sequences: 219361 Number of extensions: 878129 Number of successful extensions: 1956 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1916 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1955 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
