>MRT4_YEAST (P33201) mRNA turnover protein 4|
          Length = 236

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 397 CSNQTTLLFTDVGLRVVAEKVKTKARGDFDR 305
           CS  T LLFTD  +  V E  K+  R D+ R
Sbjct: 96  CSGVTGLLFTDEDVNTVKEYFKSYVRSDYSR 126

>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor|
          Length = 995

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 185 EIIKKKNYMTYTYTHDQDGDCCNR*ARMQCCHKTDPGGAS 304
           E +  K+Y T T TH  D  C  +    +C  +T    AS
Sbjct: 719 ETVSSKSYTTATVTHCDDNGCNTKTVTSECSKETSATTAS 758

>ELAS_PSEAE (P14756) Pseudolysin precursor (EC 3.4.24.26) (Elastase) (Neutral|
           metalloproteinase)
          Length = 498

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 361 GLRVVAE---KVKTKARGDFDRRSSSWVSFVAALHPGSPVAAVS 239
           G+RVV E   +VK   +    +RS  +V+ +AA  PGS  AAVS
Sbjct: 81  GVRVVGEAITEVKGPGKSVAAQRSGHFVANIAADLPGSTTAAVS 124

>LEU22_BRAJA (Q89X34) 3-isopropylmalate dehydratase large subunit 2 (EC|
           4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM
           isomerase 2) (IPMI 2)
          Length = 468

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 263 RMQCCHKTDPGGASAVKVAP-RLGFDFFRHHPK 358
           RM  C+ +  GGA A  VAP +  +DF R  PK
Sbjct: 218 RMTVCNMSIEGGARAGLVAPDQKAYDFLRDRPK 250

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 351  WWRKKSKPRRGATLTAEAPP 292
            WWR+  +PRR   LT   PP
Sbjct: 1623 WWRRGPRPRRRPGLTDRVPP 1642

>ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger protein 258)|
          Length = 723

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 158 FES*VINLVKGSIFM*LCTDDCWSSGDPCNLRMLSCVTNGNGYCLS*RG 12
           FE    N+V G     LC+D C+S     N   ++C  N   YC S  G
Sbjct: 204 FEVKYQNVVHG-----LCSDACFSKFHSTNNLTMNCCENCGSYCYSSSG 247

>CU26_ARADI (P80517) Adult-specific rigid cuticular protein 12.6 (ACP 12.6)|
          Length = 127

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 328 KARGDF--DRRSSSWVSFVAALHPGSPVAAVSI 236
           KA GD   DRR+++  + +AAL P +PVAA  +
Sbjct: 61  KASGDIGVDRRTAAAAAALAALAPKAPVAAAPV 93

>RAB3B_RAT (Q63941) Ras-related protein Rab-3B|
          Length = 219

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 VAPRLGFDFFRHHPKTNISEKQS 382
           +A +LGFDFF    K NIS +Q+
Sbjct: 153 LAEQLGFDFFEASAKENISVRQA 175

>RAB3B_MOUSE (Q9CZT8) Ras-related protein Rab-3B|
          Length = 219

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 VAPRLGFDFFRHHPKTNISEKQS 382
           +A +LGFDFF    K NIS +Q+
Sbjct: 153 LAEQLGFDFFEASAKENISVRQA 175

>RAB3B_HUMAN (P20337) Ras-related protein Rab-3B|
          Length = 219

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 VAPRLGFDFFRHHPKTNISEKQS 382
           +A +LGFDFF    K NIS +Q+
Sbjct: 153 LAEQLGFDFFEASAKENISVRQA 175

>RAB3B_BOVIN (P10948) Ras-related protein Rab-3B (SMG P25B)|
          Length = 219

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 VAPRLGFDFFRHHPKTNISEKQS 382
           +A +LGFDFF    K NIS +Q+
Sbjct: 153 LAEQLGFDFFEASAKENISVRQA 175

>CEZ1_HUMAN (Q6GQQ9) Zinc finger A20 domain-containing protein 1 (EC 3.-.-.-)|
           (Cellular zinc finger anti-NF-kappa B protein) (Zinc
           finger protein Cezanne)
          Length = 843

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 92  WSSGDPCNLRMLSCVTNGNGYCL 24
           W S DP + R+L   T G+G CL
Sbjct: 173 WVSVDPTSQRLLPLATTGDGNCL 195

>TM86B_MOUSE (Q497J1) Transmembrane protein 86B|
          Length = 226

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 25  RQYPFPFVTQLSILRLHGSPLDQQSSVHSYIKMEPLTKLI 144
           R++  PF+   S+  L   P+DQ S V + IK +P+  L+
Sbjct: 22  RRWLAPFILACSLYFLLWIPVDQPSWVSALIKCQPILCLV 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,920,543
Number of Sequences: 219361
Number of extensions: 1074037
Number of successful extensions: 2862
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2862
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)