ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl45f06 |
|---|---|
| Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 86.3 bits (212), Expect = 3e-17 Identities = 38/54 (70%), Positives = 47/54 (87%) Frame = -2 Query: 420 QACVPDLLKVALNCMDNVRDTDGTLRAVKSKIANLVASNMSRNWPQDLYQKVAQ 259 Q CVPDLLKVAL C+DNV DTDG++RA++SKIA +ASN RNWP+DLY+KVA+ Sbjct: 806 QTCVPDLLKVALTCLDNVPDTDGSIRAMRSKIAGFLASNTHRNWPRDLYEKVAR 859
>CHS2_NEUCR (P30589) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 2) Length = 944 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 351 TLRAVKSKIANLVASNMSRNWPQDLYQKVAQCI 253 T+ AV I++ + N SR W D +QK+ C+ Sbjct: 256 TMHAVMKNISHFCSRNKSRTWGADGWQKIVVCV 288
>CD209_HYLCO (Q8HY01) CD209 antigen (Dendritic cell-specific ICAM-3-grabbing| nonintegrin 1) (DC-SIGN1) Length = 404 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = +2 Query: 89 GLQTRQTWFHRQTTMSTHHGALNLQLPVQMVLGNGELPIQIAHFPSTSGQTQT 247 GL RQT ++ HGAL LQL +L L IQ++ FPS+ Q Q+ Sbjct: 22 GLGFRQTRGYKSLAGCLGHGALVLQLLSFTLLAG--LLIQVSKFPSSISQEQS 72
>CD209_HYLLA (Q8HY03) CD209 antigen (Dendritic cell-specific ICAM-3-grabbing| nonintegrin 1) (DC-SIGN1) Length = 450 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = +2 Query: 89 GLQTRQTWFHRQTTMSTHHGALNLQLPVQMVLGNGELPIQIAHFPSTSGQTQT 247 GL RQT ++ HGAL LQL +L L IQ++ FPS+ Q Q+ Sbjct: 22 GLGFRQTRGYKSLAGCLGHGALVLQLLSFTLLAG--LLIQVSKFPSSISQEQS 72
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1072 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Frame = +1 Query: 91 PTNKTDMVPQT--NNHVHAPWSFKPSTTCSNGVGEWGASDTDSPFP*HFRPNTNYSYALS 264 P+ PQ NH H+ +F PS+ G GASD P TN LS Sbjct: 991 PSQPPRQPPQAAPGNHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLS 1050 Query: 265 HL 270 +L Sbjct: 1051 YL 1052
>GLU2B_HUMAN (P14314) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) Length = 527 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -1 Query: 364 RYRWDPACCQVKDCEPCGKQHEQELATGFVPEGGSVHMNSLCLA*SAREMGYLYRKLP 191 R +++ A +KD E + EQE++ F P G ++ S C + E Y+YR P Sbjct: 373 RNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNE--YVYRLCP 428
>GLU2B_BOVIN (Q28034) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) (Vacuolar system-associated protein 60) (VASAP-60) Length = 533 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -1 Query: 364 RYRWDPACCQVKDCEPCGKQHEQELATGFVPEGGSVHMNSLCLA*SAREMGYLYRKLP 191 R +++ A +KD E + EQE++ F P G ++ S C + E Y+YR P Sbjct: 379 RNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNE--YVYRLCP 434
>YAAU_ECOLI (P31679) Hypothetical metabolite transport protein yaaU| Length = 443 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 173 EQVVEGLKLHGAWTWLFVCGTMSVLFVGLS 84 EQ+ LKL W L GT++ LFVG S Sbjct: 42 EQLTPALKLDADWIGLLGAGTLAGLFVGTS 71
>CHS2_PARBR (Q92444) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 2) (Class-II chitin synthase 2) Length = 1043 Score = 28.9 bits (63), Expect = 5.2 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = -2 Query: 375 DNVRDTDGTLRAVKSKIANLVASNMSRNWPQDLYQKVAQCI 253 +N D T+ + I++ + SR W +D +QK+ CI Sbjct: 318 ENEIDFTRTMHGIMRNISHFCSRTKSRTWGKDGWQKIVVCI 358
>CXI_CONMI (P69498) I-superfamily conotoxin precursor| Length = 67 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -2 Query: 144 WCVDMVVCLWNHVCLVCRPILCVSKFKKTATFHD 43 +C + C W C CR + C +F K ATF + Sbjct: 35 YCTPYLPCCWGICCDTCRNV-CHLRFGKRATFQE 67
>CXI2_CONVX (P69501) I-superfamily conotoxin-2 precursor| Length = 67 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -2 Query: 144 WCVDMVVCLWNHVCLVCRPILCVSKFKKTATFHD 43 +C + C W C CR + C +F K ATF + Sbjct: 35 YCTPYLPCCWGICCDTCRNV-CHLRFGKRATFQE 67
>CHS1_EXODE (P30600) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) (Class-II chitin synthase 1) Length = 988 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -2 Query: 351 TLRAVKSKIANLVASNMSRNWPQDLYQKVAQCI 253 T+ + IA+ + SR W +D +QK+ C+ Sbjct: 279 TMHGIMRNIAHFCSRTRSRTWGKDGWQKIVVCV 311
>CHS1_TUBUN (P55003) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) (Fragment) Length = 189 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 351 TLRAVKSKIANLVASNMSRNWPQDLYQKVAQCI 253 T+ V IA+ + + SR W +D +QK+ CI Sbjct: 7 TMHGVMRNIAHFCSRSKSRVWGKDGWQKIVVCI 39 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,655,022 Number of Sequences: 219361 Number of extensions: 1548782 Number of successful extensions: 3660 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3480 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3658 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
