ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45f04 |
|---|---|
| Clone Library Name | barley_pub |
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 32.0 bits (71), Expect = 0.37 Identities = 17/66 (25%), Positives = 26/66 (39%) Frame = -3 Query: 315 CIPSSLRYFAPPDYAWTDSVVQFFHRLCDTSHCNCNCTTISCEKAVVNCRQQSNFLPPDS 136 C +Y+ P W ++ V C C+ +T CE+ NC ++ F PP Sbjct: 379 CNKCKPKYYRPKGKHWNETDV------CSPCQCDYFFSTGHCEEETGNCECRAAFQPPSC 432 Query: 135 FGIVYG 118 YG Sbjct: 433 DSCAYG 438
>KLHL7_RAT (Q5XHZ6) Kelch-like protein 7| Length = 586 Score = 30.8 bits (68), Expect = 0.82 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 309 PSSLRYFAPPDYAWTD 262 P S RYF P DY+WTD Sbjct: 303 PQSCRYFNPKDYSWTD 318
>KLHL7_MOUSE (Q8BUL5) Kelch-like protein 7| Length = 586 Score = 30.8 bits (68), Expect = 0.82 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 309 PSSLRYFAPPDYAWTD 262 P S RYF P DY+WTD Sbjct: 303 PQSCRYFNPKDYSWTD 318
>KLHL7_HUMAN (Q8IXQ5) Kelch-like protein 7| Length = 586 Score = 30.8 bits (68), Expect = 0.82 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 309 PSSLRYFAPPDYAWTD 262 P S RYF P DY+WTD Sbjct: 303 PQSCRYFNPKDYSWTD 318
>KLHL7_CHICK (Q5ZI33) Kelch-like protein 7| Length = 586 Score = 30.8 bits (68), Expect = 0.82 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -3 Query: 309 PSSLRYFAPPDYAWTD 262 P S RYF P DY+WTD Sbjct: 303 PQSCRYFNPKDYSWTD 318
>AQP9_MOUSE (Q9JJJ3) Aquaporin-9 (AQP-9)| Length = 295 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/65 (29%), Positives = 32/65 (49%) Frame = +1 Query: 91 YLLLSHIVHTIHNTKRIGG*KIGLLPTVYNSLFTANSCTITITMGCIAQPMEELDNGIRP 270 +LLL IV I +++ +G + GL P V L SC++ + GC P +L + Sbjct: 171 FLLL--IVFAIFDSRNLGVPR-GLEPIVIGLLIIVISCSLGLNSGCAMNPARDLSPRLFT 227 Query: 271 SIIRW 285 ++ W Sbjct: 228 ALAGW 232
>AQP9_RAT (P56627) Aquaporin-9 (AQP-9)| Length = 295 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = +1 Query: 91 YLLLSHIVHTIHNTKRIGG*KIGLLPTVYNSLFTANSCTITITMGCIAQPMEELDNGIRP 270 +LLL IV + +++ +G + GL P V L SC++ + GC P +L + Sbjct: 171 FLLL--IVFAMFDSRNLGVPR-GLEPVVIGLLIIVLSCSLGLNSGCAMNPARDLSPRLFT 227 Query: 271 SIIRWS-KIAQAGRN 312 ++ W ++ G N Sbjct: 228 ALAGWGFEVFTVGNN 242
>NFS1_SCHPO (O74351) Probable cysteine desulfurase, mitochondrial precursor (EC| 2.8.1.7) Length = 498 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -3 Query: 288 APPDYAWTDSVVQFFHRLCDTSHCNCNCTTISCEKAVVNCRQQ 160 +P DY DS++ FF + H + EKAV N RQ+ Sbjct: 109 SPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQE 151
>QUEA_STAHJ (Q4L6Y5) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 341 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +1 Query: 229 IAQPMEELDNGIRPSIIRWSKIAQAGRNAIAQMHIHPY-RQ*IEWPSRY 372 IA+ +EELD G R + + I + N + +M + PY ++ ++ P RY Sbjct: 116 IAECIEELDQGGRIMRLHYEGILEERLNELGEMPLPPYIKERLDDPDRY 164
>VPP3_HUMAN (Q13488) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 3 (V-ATPase 116-kDa isoform a3) (Osteoclastic proton pump 116 kDa subunit) (OC-116 kDa) (OC116) (T-cell immune regulator 1) (T cell immune response cDNA7 protein) (TIRC7) Length = 830 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 344 LYGWICIWAIAFLPACAILLHRI 276 +Y W+C+WA A +IL+H I Sbjct: 589 IYKWLCVWAARAASAPSILIHFI 611
>GATA_STRAW (Q82JL0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 501 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 296 AILLHRIMLGRIPLSSSSIGCAIHPIV 216 A LLH ++ G PL S+SI + P+V Sbjct: 228 AALLHEVIAGHDPLDSTSIDAPVPPVV 254
>BABL_CUCSA (P00303) Basic blue protein (Cusacyanin) (Plantacyanin) (CBP)| Length = 96 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +3 Query: 228 YRTADGRTGQRNPSKHNPVEQNSAGWKECNSP 323 +R D NP HN V N G+ CN+P Sbjct: 24 FRAGDILLFNYNPXMHNVVVVNQGGFSTCNTP 55
>ALF_STRCO (Q9X8R6) Fructose-bisphosphate aldolase (EC 4.1.2.13)| Length = 343 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +1 Query: 193 ANSCTITITMGCIAQPMEELDNGIRPSIIRWSKIAQAGRNAIAQMHI 333 A +T+ + P ++LD +RP I + +AGRN + Q H+ Sbjct: 83 AEKYDVTVALHTDHCPKDKLDGYVRPLIAVSEERVKAGRNPLFQSHM 129
>XDH_CALVI (P08793) Xanthine dehydrogenase (EC 1.17.1.4) (XD)| Length = 1353 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 22/73 (30%) Frame = -3 Query: 252 QFFHRLCDTSHCNCNCTTISCEKAVVNCRQQSNF----------------------LPPD 139 Q F++ D +H EK +C QQSN+ L P Sbjct: 967 QNFYKEGDITHYQQKLDNFPIEKCFYDCLQQSNYYQKRKEIEEFNRNHRWRKRGISLVPT 1026 Query: 138 SFGIVYGVNYVTQ 100 +GI +GV+++ Q Sbjct: 1027 KYGIAFGVSHLNQ 1039
>HXC9_ORYLA (Q9PVQ9) Homeobox protein Hox-C9| Length = 262 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/51 (27%), Positives = 20/51 (39%) Frame = +3 Query: 30 CILIHQKTKNYTNHKKESTALLTTESHSSHHTQYQKNRGVKNWIAAYSLQQ 182 C + K N + LLT+ H + N V NWI A S ++ Sbjct: 146 CSSTDMRDKTQQNAPSPESELLTSGKHKEEKPELDPNNPVANWIHARSTRK 196
>IL2RG_HUMAN (P31785) Cytokine receptor common gamma chain precursor (Gamma-C)| (Interleukin-2 receptor gamma chain) (IL-2R gamma chain) (p64) (CD132 antigen) Length = 369 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/34 (26%), Positives = 19/34 (55%) Frame = -3 Query: 339 WVDMHLGYCIPSSLRYFAPPDYAWTDSVVQFFHR 238 W + L +C+ ++Y D++WT+ V + H+ Sbjct: 174 WNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHK 207
>STP2_MACMU (Q9N1A3) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 137 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 231 RTADGRTGQRNPSKH-NPVEQNSAGWKECNSPNAYPP 338 R + R+ ++P+ H NP +S+ + SPNA PP Sbjct: 47 RGSRSRSSSQSPATHQNPTGAHSSSGLQSQSPNASPP 83
>Y12K_CMVSI (Q00479) Hypothetical 12.4 kDa protein| Length = 112 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/31 (35%), Positives = 14/31 (45%) Frame = -3 Query: 324 LGYCIPSSLRYFAPPDYAWTDSVVQFFHRLC 232 + YC P+ RY PDY W + LC Sbjct: 58 INYCPPTHARYPKYPDYKWLAATAAIVIPLC 88
>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +3 Query: 228 YRTADGRTGQRNPSKH-NPVEQNSAGWKECNSPNAYPP 338 +R + R+ ++P+ H NP +S+ + SPN PP Sbjct: 41 HRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPP 78
>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +3 Query: 228 YRTADGRTGQRNPSKH-NPVEQNSAGWKECNSPNAYPP 338 +R + R+ ++P+ H NP +S+ + SPN PP Sbjct: 41 HRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPP 78
>AP1G2_HUMAN (O75843) AP-1 complex subunit gamma-2 (Adapter-related protein| complex 1 gamma-2 subunit) (Gamma2-adaptin) (Adaptor protein complex AP-1 gamma-2 subunit) (G2ad) Length = 785 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%) Frame = -1 Query: 311 FLPACAILLHR----IMLGRIPLSSSSIGCAIHPIVI-----VIVQLLAVKRLL*TVG 165 FLP CA LLH I+LG I L + C P + V+ QL+ + R L T+G Sbjct: 176 FLPPCAQLLHERHHGILLGTITLITEL--CERSPAALRHFRKVVPQLVHILRTLVTMG 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,564,490 Number of Sequences: 219361 Number of extensions: 1210713 Number of successful extensions: 3404 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3294 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3396 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
