ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Canc... 42 0.46
2ref|XM_990024.1| PREDICTED: Mus musculus RIKEN cDNA A230046K03 g... 42 0.46
3ref|XM_987037.1| PREDICTED: Mus musculus RIKEN cDNA A230046K03 g... 42 0.46
4ref|XM_985835.1| PREDICTED: Mus musculus RIKEN cDNA A230046K03 g... 42 0.46
5dbj|AK145000.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 42 0.46
6dbj|AK161247.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 0.46
7dbj|AK166233.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 42 0.46
8gb|BC026467.1| Mus musculus RIKEN cDNA A230046K03 gene, mRNA (cD... 42 0.46
9gb|BC020314.2| Mus musculus RIKEN cDNA A230046K03 gene, mRNA (cD... 42 0.46
10dbj|AK038582.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 42 0.46
11dbj|AK043911.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 42 0.46
12dbj|AK129269.1| Mus musculus mRNA for mKIAA1033 protein 42 0.46
13dbj|AP004835.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 0.46
14gb|AC112719.4| Homo sapiens BAC clone RP11-630D6 from 4, complet... 40 1.8
15gb|AC009343.9| Drosophila melanogaster clone BACR08L17, complete... 38 7.2
16gb|BC072867.1| Xenopus laevis MGC80276 protein, mRNA (cDNA clone... 38 7.2
17gb|AY426266.1| Solanum tarijense blight resistance protein T118 ... 38 7.2
18gb|AY426262.1| Solanum bulbocastanum blight resistance protein R... 38 7.2
19gb|AC158144.13| Mus musculus chromosome 7, clone RP23-82N3, comp... 38 7.2
20emb|AL671309.6| Human DNA sequence from clone RP11-409O11 on chr... 38 7.2
21gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, ... 38 7.2
22gb|AY303170.1| Solanum bulbocastanum chromosome 8 clone CB3A14, ... 38 7.2
23emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chr... 38 7.2
24emb|AL139114.12| Human DNA sequence from clone RP11-328C23 on ch... 38 7.2
25emb|AL731714.9| Mouse DNA sequence from clone RP23-117H24 on chr... 38 7.2
26emb|BX537344.8| Zebrafish DNA sequence from clone RP71-34B6 in l... 38 7.2
27ref|NM_136764.2| Drosophila melanogaster CG12340-RA (CG12340), mRNA 38 7.2
28gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 38 7.2
29gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, r... 38 7.2
30gb|AC104921.9| Mus musculus chromosome 7, clone RP23-474B13, com... 38 7.2
31emb|BX510342.7| Zebrafish DNA sequence from clone DKEY-15I15 in ... 38 7.2
32gb|AF145688.1|AF145688 Drosophila melanogaster clone LD26050 BcD... 38 7.2
33gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22... 38 7.2
34dbj|AP003096.3| Homo sapiens genomic DNA, chromosome 11 clone:CT... 38 7.2

>gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190780

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   agtttatgtatgatgagcata 123
             |||||||||||||||||||||
Sbjct: 84473 agtttatgtatgatgagcata 84493



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>ref|XM_990024.1| PREDICTED: Mus musculus RIKEN cDNA A230046K03 gene (A230046K03Rik),
            mRNA
          Length = 6027

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2834 agtttatgtatgatgagcata 2854



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>ref|XM_987037.1| PREDICTED: Mus musculus RIKEN cDNA A230046K03 gene (A230046K03Rik),
            mRNA
          Length = 6028

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2834 agtttatgtatgatgagcata 2854



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>ref|XM_985835.1| PREDICTED: Mus musculus RIKEN cDNA A230046K03 gene (A230046K03Rik),
            mRNA
          Length = 6027

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2834 agtttatgtatgatgagcata 2854



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>dbj|AK145000.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length
            enriched library, clone:G830022O04 product:hypothetical
            protein, full insert sequence
          Length = 3519

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2647 agtttatgtatgatgagcata 2667



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>dbj|AK161247.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921509H15 product:hypothetical protein,
           full insert sequence
          Length = 3302

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 agtttatgtatgatgagcata 123
           |||||||||||||||||||||
Sbjct: 113 agtttatgtatgatgagcata 133



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>dbj|AK166233.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length
            enriched library, clone:G830022A18 product:hypothetical
            protein, full insert sequence
          Length = 3507

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2638 agtttatgtatgatgagcata 2658



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>gb|BC026467.1| Mus musculus RIKEN cDNA A230046K03 gene, mRNA (cDNA clone
            IMAGE:4485556), partial cds
          Length = 2510

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 1626 agtttatgtatgatgagcata 1646



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>gb|BC020314.2| Mus musculus RIKEN cDNA A230046K03 gene, mRNA (cDNA clone
            IMAGE:5012667), partial cds
          Length = 3185

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2300 agtttatgtatgatgagcata 2320



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>dbj|AK038582.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230046K03 product:hypothetical protein,
            full insert sequence
          Length = 3492

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2623 agtttatgtatgatgagcata 2643



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>dbj|AK043911.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830049P21 product:hypothetical protein,
            full insert sequence
          Length = 3523

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2636 agtttatgtatgatgagcata 2656



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>dbj|AK129269.1| Mus musculus mRNA for mKIAA1033 protein
          Length = 4977

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  agtttatgtatgatgagcata 123
            |||||||||||||||||||||
Sbjct: 2195 agtttatgtatgatgagcata 2215



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>dbj|AP004835.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-629D8, complete
             sequence
          Length = 134743

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 56    ttaccatacaccaccatacttcatt 80
             |||||||||||||||| ||||||||
Sbjct: 60485 ttaccatacaccaccaaacttcatt 60461



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>gb|AC112719.4| Homo sapiens BAC clone RP11-630D6 from 4, complete sequence
          Length = 167284

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     tgctatgctgccttaccata 63
              ||||||||||||||||||||
Sbjct: 156776 tgctatgctgccttaccata 156795



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>gb|AC009343.9| Drosophila melanogaster clone BACR08L17, complete sequence
          Length = 182492

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 92     aacagatgatgagtttatgtatg 114
              ||||||||||| |||||||||||
Sbjct: 171806 aacagatgatgtgtttatgtatg 171784



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>gb|BC072867.1| Xenopus laevis MGC80276 protein, mRNA (cDNA clone MGC:80276
            IMAGE:5073388), complete cds
          Length = 3015

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 35   ccatgtcattgctatgctg 53
            |||||||||||||||||||
Sbjct: 2839 ccatgtcattgctatgctg 2821



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>gb|AY426266.1| Solanum tarijense blight resistance protein T118 gene, partial cds
          Length = 3641

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 69   ccatacttcattacccaca 87
            |||||||||||||||||||
Sbjct: 2136 ccatacttcattacccaca 2118



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>gb|AY426262.1| Solanum bulbocastanum blight resistance protein RGA4 gene, complete
            cds
          Length = 3899

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 69   ccatacttcattacccaca 87
            |||||||||||||||||||
Sbjct: 2285 ccatacttcattacccaca 2267



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>gb|AC158144.13| Mus musculus chromosome 7, clone RP23-82N3, complete sequence
          Length = 213341

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 85   acagcataacagatgatga 103
            |||||||||||||||||||
Sbjct: 5207 acagcataacagatgatga 5225



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>emb|AL671309.6| Human DNA sequence from clone RP11-409O11 on chromosome 9 Contains the
             5' UTR of the TMEM2 gene for transmembrane protein 2, the
             3' end of a novel gene (CGI-67) and a CpG island, complete
             sequence
          Length = 117976

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 71    atacttcattacccacagcataa 93
             |||||||| ||||||||||||||
Sbjct: 61555 atacttcaatacccacagcataa 61533



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>gb|AY303171.1| Solanum bulbocastanum chromosome 8 clone 177O13, complete sequence
          Length = 163635

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    ccatacttcattacccaca 87
             |||||||||||||||||||
Sbjct: 68889 ccatacttcattacccaca 68907



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>gb|AY303170.1| Solanum bulbocastanum chromosome 8 clone CB3A14, complete sequence
          Length = 79178

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    ccatacttcattacccaca 87
             |||||||||||||||||||
Sbjct: 60111 ccatacttcattacccaca 60093



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>emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 203279

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 89    cataacagatgatgagtttatgt 111
             |||||||||||||||||| ||||
Sbjct: 27734 cataacagatgatgagttcatgt 27712



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>emb|AL139114.12| Human DNA sequence from clone RP11-328C23 on chromosome 9p22.3-24.1,
             complete sequence
          Length = 132139

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    atgtcattgctatgctgcc 55
             |||||||||||||||||||
Sbjct: 71150 atgtcattgctatgctgcc 71168



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>emb|AL731714.9| Mouse DNA sequence from clone RP23-117H24 on chromosome 11 Contains the
             gene for a novel protein (4933427E13Rik), complete
             sequence
          Length = 208133

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 19    gcaggagcaggcctagccatgtcattg 45
             |||||||||||| |||||||| |||||
Sbjct: 71682 gcaggagcaggcatagccatgacattg 71708



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>emb|BX537344.8| Zebrafish DNA sequence from clone RP71-34B6 in linkage group 2, complete
              sequence
          Length = 174019

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     taacagatgatgagtttat 109
              |||||||||||||||||||
Sbjct: 129721 taacagatgatgagtttat 129739



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>ref|NM_136764.2| Drosophila melanogaster CG12340-RA (CG12340), mRNA
          Length = 4794

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  aacagatgatgagtttatgtatg 114
           ||||||||||| |||||||||||
Sbjct: 890 aacagatgatgtgtttatgtatg 912



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>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 91     taacagatgatgagtttat 109
              |||||||||||||||||||
Sbjct: 211876 taacagatgatgagtttat 211858



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>gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, region 47B-47C, BAC clone
            BACR13J10, complete sequence
          Length = 140940

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 92   aacagatgatgagtttatgtatg 114
            ||||||||||| |||||||||||
Sbjct: 2770 aacagatgatgtgtttatgtatg 2748



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>gb|AC104921.9| Mus musculus chromosome 7, clone RP23-474B13, complete sequence
          Length = 182487

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    acagcataacagatgatga 103
             |||||||||||||||||||
Sbjct: 29454 acagcataacagatgatga 29436



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>emb|BX510342.7| Zebrafish DNA sequence from clone DKEY-15I15 in linkage group 2, complete
              sequence
          Length = 186711

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     taacagatgatgagtttat 109
              |||||||||||||||||||
Sbjct: 130998 taacagatgatgagtttat 131016



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>gb|AF145688.1|AF145688 Drosophila melanogaster clone LD26050 BcDNA.LD26050 (BcDNA.LD26050)
           mRNA, complete cds
          Length = 4812

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  aacagatgatgagtttatgtatg 114
           ||||||||||| |||||||||||
Sbjct: 890 aacagatgatgtgtttatgtatg 912



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>gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22 of 73 of the complete
              sequence
          Length = 257907

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 92     aacagatgatgagtttatgtatg 114
              ||||||||||| |||||||||||
Sbjct: 163720 aacagatgatgtgtttatgtatg 163698



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>dbj|AP003096.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2007L18, complete
              sequence
          Length = 174605

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 8      tgccttaccatgcaggagcaggc 30
              |||||||| ||||||||||||||
Sbjct: 132755 tgccttacaatgcaggagcaggc 132733


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,070,965
Number of Sequences: 3902068
Number of extensions: 1070965
Number of successful extensions: 73738
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73685
Number of HSP's gapped (non-prelim): 53
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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