ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in ... 52 0.001
2gb|AC138791.3| Mus musculus BAC clone RP23-222G6 from chromosome... 46 0.066
3emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13,... 46 0.066
4emb|BX465189.9| Zebrafish DNA sequence from clone RP71-47G15 in ... 42 1.0
5emb|AL929286.13| Zebrafish DNA sequence from clone CH211-117K10 ... 42 1.0
6emb|AL353789.18| Human DNA sequence from clone RP11-570F6 on chr... 40 4.0
7gb|AC166324.1| Mus musculus BAC clone RP24-500J7 from chromosome... 40 4.0
8emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 ... 40 4.0
9emb|BX530081.6| Zebrafish DNA sequence from clone CH211-121B13 i... 40 4.0
10dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 40 4.0
11gb|AC104195.10| Mus musculus chromosome 5, clone RP24-95O4, comp... 40 4.0
12dbj|AK033225.1| Mus musculus 15 days embryo male testis cDNA, RI... 40 4.0
13gb|AC012175.7| Homo sapiens chromosome 16 clone RP11-19H6, compl... 40 4.0
14emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in ... 40 4.0
15emb|BX088579.5| Zebrafish DNA sequence from clone CH211-198C19 i... 40 4.0
16emb|AL954130.8| Zebrafish DNA sequence from clone CH211-214D1 in... 40 4.0
17emb|CT030659.8| Mouse DNA sequence from clone RP23-125F8 on chro... 40 4.0

>emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in linkage group 15,
              complete sequence
          Length = 213513

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 9      tagagatgtctgtcagtatggttaaa 34
              ||||||||||||||||||||||||||
Sbjct: 208564 tagagatgtctgtcagtatggttaaa 208539



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>gb|AC138791.3| Mus musculus BAC clone RP23-222G6 from chromosome 7, complete sequence
          Length = 203288

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 46    cacaaacaatgaacctgaagaag 68
             |||||||||||||||||||||||
Sbjct: 58015 cacaaacaatgaacctgaagaag 57993



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>emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13, complete sequence
          Length = 178447

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 142   taatttacatatacagcaccaat 164
             |||||||||||||||||||||||
Sbjct: 52867 taatttacatatacagcaccaat 52889



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>emb|BX465189.9| Zebrafish DNA sequence from clone RP71-47G15 in linkage group 23,
             complete sequence
          Length = 132715

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tgtctgtcagtatggttaaac 35
             |||||||||||||||||||||
Sbjct: 69563 tgtctgtcagtatggttaaac 69583



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>emb|AL929286.13| Zebrafish DNA sequence from clone CH211-117K10 in linkage group 11,
              complete sequence
          Length = 168222

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     ctgtcagtatggttaaacaca 38
              |||||||||||||||||||||
Sbjct: 113615 ctgtcagtatggttaaacaca 113635



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>emb|AL353789.18| Human DNA sequence from clone RP11-570F6 on chromosome 13 Contains the
             5' end of the WASF3 gene for WAS protein family, member 3
             (WASP family Verprolin-homologous protein 3(SCAR3, Scar3,
             WAVE3, KIAA0900)), a ribosomal protein S3A (RPS3A)(FTE1)
             pseudogene and a CpG island, complete sequence
          Length = 166787

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gcaccatgtctactgtgtgc 184
             ||||||||||||||||||||
Sbjct: 62667 gcaccatgtctactgtgtgc 62648



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>gb|AC166324.1| Mus musculus BAC clone RP24-500J7 from chromosome 9, complete sequence
          Length = 168018

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ggtctacagaaaccaatatt 275
             ||||||||||||||||||||
Sbjct: 39196 ggtctacagaaaccaatatt 39215



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>emb|BX248577.16| Zebrafish DNA sequence from clone CH211-162H21 in linkage group 11,
             complete sequence
          Length = 155980

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ctgtcagtatggttaaacac 37
             ||||||||||||||||||||
Sbjct: 88279 ctgtcagtatggttaaacac 88260



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>emb|BX530081.6| Zebrafish DNA sequence from clone CH211-121B13 in linkage group 14,
              complete sequence
          Length = 162058

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tgtctgtcagtatggttaaa 34
              ||||||||||||||||||||
Sbjct: 132728 tgtctgtcagtatggttaaa 132747



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>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
          Length = 2356219

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aatgaacctgaagaagtcga 72
              ||||||||||||||||||||
Sbjct: 350010 aatgaacctgaagaagtcga 349991



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>gb|AC104195.10| Mus musculus chromosome 5, clone RP24-95O4, complete sequence
          Length = 214251

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    aatattcaaaacaaggccaa 289
              ||||||||||||||||||||
Sbjct: 161968 aatattcaaaacaaggccaa 161987



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>dbj|AK033225.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:8030468D16
            product:unclassifiable, full insert sequence
          Length = 1878

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  aatattcaaaacaaggccaa 289
            ||||||||||||||||||||
Sbjct: 1840 aatattcaaaacaaggccaa 1859



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>gb|AC012175.7| Homo sapiens chromosome 16 clone RP11-19H6, complete sequence
          Length = 180634

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   tacagaaaccaatattcaaa 279
             ||||||||||||||||||||
Sbjct: 61773 tacagaaaccaatattcaaa 61754



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>emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in linkage group 22,
             complete sequence
          Length = 222879

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ctgtcagtatggttaaacac 37
             ||||||||||||||||||||
Sbjct: 39171 ctgtcagtatggttaaacac 39152



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>emb|BX088579.5| Zebrafish DNA sequence from clone CH211-198C19 in linkage group 16,
              complete sequence
          Length = 214474

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tgtctgtcagtatggttaaa 34
              ||||||||||||||||||||
Sbjct: 182530 tgtctgtcagtatggttaaa 182511



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>emb|AL954130.8| Zebrafish DNA sequence from clone CH211-214D1 in linkage group 16,
              complete sequence
          Length = 235236

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tgtctgtcagtatggttaaa 34
              ||||||||||||||||||||
Sbjct: 156313 tgtctgtcagtatggttaaa 156294



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>emb|CT030659.8| Mouse DNA sequence from clone RP23-125F8 on chromosome 9, complete
              sequence
          Length = 199662

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ggtctacagaaaccaatatt 275
              ||||||||||||||||||||
Sbjct: 123227 ggtctacagaaaccaatatt 123246


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,831,009
Number of Sequences: 3902068
Number of extensions: 2831009
Number of successful extensions: 48385
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48354
Number of HSP's gapped (non-prelim): 31
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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