>VGNM_BPMV (P23009) Genome polyprotein M (RNA2 polyprotein) [Contains:|
           Movement protein (MP); Large coat protein (LCP) (Coat
           protein VP37); Small coat protein (SCP) (Coat protein
           VP23)]
          Length = 1018

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 18  NKPLSQLEKQASWEENCLVVQTVYIGD 98
           N P+S L + A+W++ CL+V+ V  G+
Sbjct: 873 NSPISNLLRVAAWKKGCLMVKVVMSGN 899

>GERXB_BACAN (Q9ZFB5) Spore germination protein XB|
          Length = 355

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +3

Query: 210 GKNSIQHITGIVLP-----SLFCQLKD*SQRERSLLKPLAEH 320
           G  SI   TGI+LP       F  + +   ++ SLLKP+ EH
Sbjct: 131 GVQSIALTTGILLPVVFLLGFFVMIANFPHKDYSLLKPIMEH 172

>INCE_CHICK (P53352) Inner centromere protein|
          Length = 877

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 357 PSEKDKQPAESS--DAQPVA*AENVLSDFSPSAGKTGK 250
           PS  DK P ESS  ++QP+  A  ++   +P A   GK
Sbjct: 188 PSSDDKSPKESSAAESQPLPAASELIVPHTPEAKGAGK 225

>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 390  EAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEARYR*YVELSS 214
            EAE  +   RR S  +K P  S +A +P + AE+V  +    A K+ +E+R     E S 
Sbjct: 3775 EAEKSKEESRRESVAEKSPLASKEASRPASVAESVKDE----AEKSKEESRRESVAEKSP 3830

Query: 213  CPKR 202
             P +
Sbjct: 3831 LPSK 3834



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 390  EAEVRRTMKRRPSEKDKQPAESSDA-QPVA*AENVLSDFSPSAGKTGKEA 244
            EAE  +   RR S  +K P  S +A +P + AE+V  D   S  ++ +E+
Sbjct: 3627 EAEKSKEESRRESVAEKSPLASKEASRPASVAESVKDDAEKSKEESRRES 3676


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,487,273
Number of Sequences: 219361
Number of extensions: 841848
Number of successful extensions: 2206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2206
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)