ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
2dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
3dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
4dbj|AK099745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
5gb|AC163677.2| Mus musculus BAC clone RP24-86D16 from chromosome... 46 0.085
6dbj|AK144403.1| Mus musculus 11 days embryo spinal cord cDNA, RI... 46 0.085
7dbj|AK154868.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 46 0.085
8dbj|AK152362.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 46 0.085
9dbj|AK155551.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 46 0.085
10dbj|AK167343.1| Mus musculus 14 days embryo liver cDNA, RIKEN fu... 46 0.085
11dbj|AK090329.1| Mus musculus 15 days embryo brain cDNA, RIKEN fu... 46 0.085
12dbj|AK218255.1| Mus musculus cDNA, clone:Y2G0144I19, strand:minu... 46 0.085
13dbj|AK214463.1| Mus musculus cDNA, clone:Y2G0131N14, strand:minu... 46 0.085
14dbj|AK212100.1| Mus musculus cDNA, clone:Y2G0123N18, strand:plus... 46 0.085
15dbj|AK212091.1| Mus musculus cDNA, clone:Y2G0123N09, strand:minu... 46 0.085
16dbj|AK211181.1| Mus musculus cDNA, clone:Y2G0120O15, strand:plus... 46 0.085
17dbj|AK207704.1| Mus musculus cDNA, clone:Y2G0108N15, strand:minu... 46 0.085
18dbj|AK207266.1| Mus musculus cDNA, clone:Y2G0107H11, strand:plus... 46 0.085
19dbj|AK183228.1| Mus musculus cDNA, clone:Y0G0125C16, strand:plus... 46 0.085
20gb|BC025875.1| Mus musculus solute carrier family 35, member B2,... 46 0.085
21gb|BC036992.1| Mus musculus solute carrier family 35, member B2,... 46 0.085
22emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86... 44 0.34
23gb|AF134591.2|AF134591 Cryptosporidium parvum P-type ATPase 2 (A... 44 0.34
24gb|AC169702.1| Rhesus Macaque BAC CH250-107F18 (Children's Hosp... 42 1.3
25gb|AC017005.7| Homo sapiens BAC clone RP11-100J21 from Y, comple... 42 1.3
26emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on ch... 42 1.3
27gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, comp... 42 1.3
28gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete s... 42 1.3
29ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 1.3
30gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, com... 40 5.3
31gb|AC102938.20| Mus musculus chromosome 1, clone RP24-187H3, com... 40 5.3
32gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, co... 40 5.3
33gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, c... 40 5.3
34gb|AC004016.1| Homo sapiens BAC clone CTA-424N5 from 7, complete... 40 5.3
35gb|AY458633.1| Uncultured bacterium 313 clone EBAC750-11E01 geno... 40 5.3
36gb|AC146026.2| Pan troglodytes BAC clone RP43-120F17 from 7, com... 40 5.3
37gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Ho... 40 5.3
38gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, com... 40 5.3
39emb|CR861258.1| Pongo pygmaeus mRNA; cDNA DKFZp459H223 (from clo... 40 5.3
40emb|CR860338.1| Pongo pygmaeus mRNA; cDNA DKFZp459K1245 (from cl... 40 5.3
41emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 ... 40 5.3
42gb|AC022960.13| Homo sapiens chromosome 18, clone RP11-210K20, c... 40 5.3
43gb|AC140242.5| Mus musculus BAC clone RP23-290N4 from chromosome... 40 5.3
44gb|AC174643.3| Mus musculus BAC clone RP24-235D23 from chromosom... 40 5.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                             
Query: 341      ttatctttctcactcggtctccgcttcatcgttctcctgacttct 385
                |||||||||||||| |||||||||||||||| | |||||||||||
Sbjct: 27966818 ttatctttctcacttggtctccgcttcatcgatttcctgacttct 27966774
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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0547F09
          Length = 140615

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                          
Query: 341   ttatctttctcactcggtctccgcttcatcgttctcctgacttct 385
             |||||||||||||| |||||||||||||||| | |||||||||||
Sbjct: 11637 ttatctttctcacttggtctccgcttcatcgatttcctgacttct 11593
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>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0003H08
          Length = 142068

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                           
Query: 341    ttatctttctcactcggtctccgcttcatcgttctcctgacttct 385
              |||||||||||||| |||||||||||||||| | |||||||||||
Sbjct: 120741 ttatctttctcacttggtctccgcttcatcgatttcctgacttct 120697
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>dbj|AK099745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J21, full
            insert sequence
          Length = 3189

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 341  ttatctttctcactcggtctccgcttcatcgttctcctgacttct 385
            ||||| |||||||| |||||||||||||||| | |||||||||||
Sbjct: 2900 ttatccttctcacttggtctccgcttcatcgatttcctgacttct 2856
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>gb|AC163677.2| Mus musculus BAC clone RP24-86D16 from chromosome 17, complete sequence
          Length = 222584

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 49    ccagctgggaagagaattgttta 71
             |||||||||||||||||||||||
Sbjct: 37011 ccagctgggaagagaattgttta 36989
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>dbj|AK144403.1| Mus musculus 11 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:G630055L22 product:solute carrier
            family 35, member B1, full insert sequence
          Length = 1834

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 1653 ccagctgggaagagaattgttta 1675
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>dbj|AK154868.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630110B06
            product:solute carrier family 35, member B1, full insert
            sequence
          Length = 1797

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 1616 ccagctgggaagagaattgttta 1638
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>dbj|AK152362.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830067A10 product:solute carrier family
            35, member B1, full insert sequence
          Length = 1813

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 1631 ccagctgggaagagaattgttta 1653
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>dbj|AK155551.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630322E07
            product:solute carrier family 35, member B1, full insert
            sequence
          Length = 1845

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 1663 ccagctgggaagagaattgttta 1685
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>dbj|AK167343.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
            library, clone:I530005M14 product:solute carrier family
            35, member B1, full insert sequence
          Length = 2139

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 1958 ccagctgggaagagaattgttta 1980
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>dbj|AK090329.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched
            library, clone:G630052M14 product:EMBRYONIC SEVEN-SPAN
            TRANSMEMBRANE PROTEIN-LIKE PROTEIN homolog [Mus
            musculus], full insert sequence
          Length = 2329

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 2148 ccagctgggaagagaattgttta 2170
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>dbj|AK218255.1| Mus musculus cDNA, clone:Y2G0144I19, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 400

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 49  ccagctgggaagagaattgttta 71
           |||||||||||||||||||||||
Sbjct: 208 ccagctgggaagagaattgttta 230
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>dbj|AK214463.1| Mus musculus cDNA, clone:Y2G0131N14, strand:minus,
          reference:ENSEMBL:Mouse-Transcript-
          ENST:ENSMUST00000051684, based on BLAT search
          Length = 389

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 ccagctgggaagagaattgttta 71
          |||||||||||||||||||||||
Sbjct: 40 ccagctgggaagagaattgttta 62
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>dbj|AK212100.1| Mus musculus cDNA, clone:Y2G0123N18, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 411

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 49  ccagctgggaagagaattgttta 71
           |||||||||||||||||||||||
Sbjct: 292 ccagctgggaagagaattgttta 314
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>dbj|AK212091.1| Mus musculus cDNA, clone:Y2G0123N09, strand:minus,
          reference:ENSEMBL:Mouse-Transcript-
          ENST:ENSMUST00000051684, based on BLAT search
          Length = 408

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 ccagctgggaagagaattgttta 71
          |||||||||||||||||||||||
Sbjct: 59 ccagctgggaagagaattgttta 81
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>dbj|AK211181.1| Mus musculus cDNA, clone:Y2G0120O15, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 379

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 49  ccagctgggaagagaattgttta 71
           |||||||||||||||||||||||
Sbjct: 292 ccagctgggaagagaattgttta 314
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>dbj|AK207704.1| Mus musculus cDNA, clone:Y2G0108N15, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 380

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 49  ccagctgggaagagaattgttta 71
           |||||||||||||||||||||||
Sbjct: 188 ccagctgggaagagaattgttta 210
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>dbj|AK207266.1| Mus musculus cDNA, clone:Y2G0107H11, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 399

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 49  ccagctgggaagagaattgttta 71
           |||||||||||||||||||||||
Sbjct: 291 ccagctgggaagagaattgttta 313
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>dbj|AK183228.1| Mus musculus cDNA, clone:Y0G0125C16, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000051684, based on BLAT search
          Length = 420

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 49  ccagctgggaagagaattgttta 71
           |||||||||||||||||||||||
Sbjct: 294 ccagctgggaagagaattgttta 316
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>gb|BC025875.1| Mus musculus solute carrier family 35, member B2, mRNA (cDNA clone
            MGC:31031 IMAGE:5137689), complete cds
          Length = 1850

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 1629 ccagctgggaagagaattgttta 1651
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>gb|BC036992.1| Mus musculus solute carrier family 35, member B2, mRNA (cDNA clone
            MGC:46984 IMAGE:5003855), complete cds
          Length = 1884

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 49   ccagctgggaagagaattgttta 71
            |||||||||||||||||||||||
Sbjct: 1637 ccagctgggaagagaattgttta 1659
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>emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86L3, complete sequence
          Length = 154099

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 140    catgctacaacaacaagttaga 161
              ||||||||||||||||||||||
Sbjct: 128788 catgctacaacaacaagttaga 128809
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>gb|AF134591.2|AF134591 Cryptosporidium parvum P-type ATPase 2 (ATPase2) gene, complete cds
          Length = 3863

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 111 acttgatgaaagaaaaaagatt 132
           ||||||||||||||||||||||
Sbjct: 201 acttgatgaaagaaaaaagatt 222
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>gb|AC169702.1| Rhesus Macaque  BAC CH250-107F18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 157010

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 222   attcaacatattaccggtatc 242
             |||||||||||||||||||||
Sbjct: 31149 attcaacatattaccggtatc 31169
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>gb|AC017005.7| Homo sapiens BAC clone RP11-100J21 from Y, complete sequence
          Length = 94921

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     tagagatgcaactgaaataaa 23
             |||||||||||||||||||||
Sbjct: 19896 tagagatgcaactgaaataaa 19916
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>emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on chromosome 13 Contains the
             gene for the ortholog of rat and human
             ubiquinol-cytochrome c reductase, Rieske iron-sulfur
             polypeptide 1 UQCRFS1, a novel gene and a CpG island,
             complete sequence
          Length = 194065

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   ctgaaggactgaagtcagaga 287
             |||||||||||||||||||||
Sbjct: 54116 ctgaaggactgaagtcagaga 54136
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>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence
          Length = 101912

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    tagagatgcaactgaaataaa 23
            |||||||||||||||||||||
Sbjct: 1034 tagagatgcaactgaaataaa 1014
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>gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete sequence
          Length = 120951

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     tagagatgcaactgaaataaa 23
             |||||||||||||||||||||
Sbjct: 58850 tagagatgcaactgaaataaa 58830
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 3       tagagatgcaactgaaataaa 23
               |||||||||||||||||||||
Sbjct: 4002070 tagagatgcaactgaaataaa 4002090



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 3       tagagatgcaactgaaataaa 23
               |||||||||||||||||||||
Sbjct: 2046262 tagagatgcaactgaaataaa 2046242
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>gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, complete sequence
          Length = 187614

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tcctgacttctgcctccttc 394
             ||||||||||||||||||||
Sbjct: 42601 tcctgacttctgcctccttc 42620
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>gb|AC102938.20| Mus musculus chromosome 1, clone RP24-187H3, complete sequence
          Length = 197114

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tcctgacttctgcctccttc 394
             ||||||||||||||||||||
Sbjct: 62235 tcctgacttctgcctccttc 62216
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>gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, complete sequence
          Length = 137626

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     aactgaaataaaccactttc 31
              ||||||||||||||||||||
Sbjct: 122654 aactgaaataaaccactttc 122635
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>gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, complete sequence
          Length = 134714

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aactgaaataaaccactttc 31
             ||||||||||||||||||||
Sbjct: 30543 aactgaaataaaccactttc 30524
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>gb|AC004016.1| Homo sapiens BAC clone CTA-424N5 from 7, complete sequence
          Length = 111942

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   aatgacttgatgaaagaaaa 126
             ||||||||||||||||||||
Sbjct: 12625 aatgacttgatgaaagaaaa 12606
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>gb|AY458633.1| Uncultured bacterium 313 clone EBAC750-11E01 genomic sequence
          Length = 27088

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   tacaacaacaagttagatca 164
             ||||||||||||||||||||
Sbjct: 23256 tacaacaacaagttagatca 23237
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>gb|AC146026.2| Pan troglodytes BAC clone RP43-120F17 from 7, complete sequence
          Length = 169511

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   aatgacttgatgaaagaaaa 126
             ||||||||||||||||||||
Sbjct: 33255 aatgacttgatgaaagaaaa 33274
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>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 293757

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   gactgaagtcagagagaacg 292
             ||||||||||||||||||||
Sbjct: 79551 gactgaagtcagagagaacg 79532
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>gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, complete sequence
          Length = 179409

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gaaggactgaagtcagagag 288
             ||||||||||||||||||||
Sbjct: 12785 gaaggactgaagtcagagag 12804
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>emb|CR861258.1| Pongo pygmaeus mRNA; cDNA DKFZp459H223 (from clone DKFZp459H223)
          Length = 3619

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  gaaggactgaagtcagagag 288
            ||||||||||||||||||||
Sbjct: 2049 gaaggactgaagtcagagag 2068
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>emb|CR860338.1| Pongo pygmaeus mRNA; cDNA DKFZp459K1245 (from clone DKFZp459K1245)
          Length = 2025

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 gaaggactgaagtcagagag 288
           ||||||||||||||||||||
Sbjct: 454 gaaggactgaagtcagagag 473
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>emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 in linkage group 5,
             complete sequence
          Length = 160405

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   ctgaaggactgaagtcagag 286
             ||||||||||||||||||||
Sbjct: 72643 ctgaaggactgaagtcagag 72624
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>gb|AC022960.13| Homo sapiens chromosome 18, clone RP11-210K20, complete sequence
          Length = 171051

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    gaaggactgaagtcagagag 288
              ||||||||||||||||||||
Sbjct: 171010 gaaggactgaagtcagagag 171029
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>gb|AC140242.5| Mus musculus BAC clone RP23-290N4 from chromosome 8, complete sequence
          Length = 168835

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    acaagccagctgggaagaga 63
             ||||||||||||||||||||
Sbjct: 65637 acaagccagctgggaagaga 65656
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>gb|AC174643.3| Mus musculus BAC clone RP24-235D23 from chromosome 8, complete sequence
          Length = 197695

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    acaagccagctgggaagaga 63
             ||||||||||||||||||||
Sbjct: 81897 acaagccagctgggaagaga 81916


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,552,690
Number of Sequences: 3902068
Number of extensions: 4552690
Number of successful extensions: 86549
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86439
Number of HSP's gapped (non-prelim): 110
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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