ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45e09 |
|---|---|
| Clone Library Name | barley_pub |
>CCG8_RAT (Q8VHW5) Voltage-dependent calcium channel gamma-8 subunit| (Neuronal voltage-gated calcium channel gamma-8 subunit) Length = 421 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 251 MHHGFRRVDAAPIIIAITNPRPAPSDAPTAAAVTDP 358 +H+ F + A+ + + +T P AP+ AP A A P Sbjct: 364 LHNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAP 399
>RECR_NEIG1 (Q5F8K5) Recombination protein recR| Length = 205 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 370 TKKRWICHSCCGRCITWCRPGVCN 299 T R +CH C RC T+C G+C+ Sbjct: 51 TALRQVCH--CARCNTFCEGGLCD 72
>GDN_HUMAN (P07093) Glia-derived nexin precursor (GDN) (Protease nexin I)| (PN-1) (Protease inhibitor 7) Length = 398 Score = 28.5 bits (62), Expect = 4.1 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +2 Query: 107 PENKNLKTSSLELGLCWHFPHTLVLSVRRCSITSA*N-TDYTLIKQPN*MHHGFRRVDAA 283 PEN +T G + P LSV RC TSA N Y I+ P +HG ++ Sbjct: 199 PENTKKRTFVAADGKSYQVPMLAQLSVFRCGSTSAPNDLWYNFIELP---YHG----ESI 251 Query: 284 PIIIAITNPRPAPSDAPTAAAV 349 ++IA+ P S P +A + Sbjct: 252 SMLIAL----PTESSTPLSAII 269
>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)| Length = 461 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ GAR + LFV H Sbjct: 210 SGSELVQKFIGEGARMVRELFVMAREH 236
>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ GAR + LFV H Sbjct: 215 SGSELVQKFIGEGARMVRELFVMAREH 241
>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding protein homolog 10) (TBP10) Length = 406 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ GAR + LFV H Sbjct: 215 SGSELVQKFIGEGARMVRELFVMAREH 241
>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1) Length = 406 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ GAR + LFV H Sbjct: 215 SGSELVQKFIGEGARMVRELFVMAREH 241
>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ GAR + LFV H Sbjct: 215 SGSELVQKFIGEGARMVRELFVMAREH 241
>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) Length = 406 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ GAR + LFV H Sbjct: 215 SGSELVQKFIGEGARMVRELFVMAREH 241
>CDN1C_HUMAN (P49918) Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent| kinase inhibitor p57) (p57KIP2) Length = 316 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 278 AAPIIIAITNPRPAPSDAPTAA 343 AAP+ +A+ P PAP+ AP A Sbjct: 170 AAPVAVAVLAPAPAPAPAPAPA 191
>CCG8_MOUSE (Q8VHW2) Voltage-dependent calcium channel gamma-8 subunit| (Neuronal voltage-gated calcium channel gamma-8 subunit) Length = 423 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +2 Query: 251 MHHGFRRVDAAPIIIAITNPRPAPSDAPTAAAVTDPS 361 +H+ F + A+ + + +T P AP+ AP A P+ Sbjct: 364 LHNAFPKEAASGVTVTVTGPPAAPAPAPAPPAPAAPA 400
>CASK_HUMAN (P07498) Kappa-casein precursor| Length = 182 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%) Frame = +2 Query: 227 TLIKQPN*MHHGFRRVDAAPI----------IIAITNPRPAPSDAPTAAAVTDPSLF 367 T++++PN +H F + I IA P PAP+ PT +V P F Sbjct: 106 TVVRRPN-LHPSFIAIPPKKIQDKIIIPTINTIATVEPTPAPATEPTVDSVVTPEAF 161
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +2 Query: 278 AAPIIIAITNPRPAPSDAPTAAAVTDP 358 AAP + ++ P PAP+ PT T P Sbjct: 578 AAPALTSVPAPAPAPTPTPTPVQPTSP 604
>GPX1_RAT (P04041) Glutathione peroxidase 1 (EC 1.11.1.9) (GSHPx-1) (GPx-1)| (Cellular glutathione peroxidase) Length = 201 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 278 AAPIIIAITNPRPAPSDAPTAAAVTDP 358 A P+ + N PAPSD PT A +TDP Sbjct: 120 AHPLFTFLRNALPAPSDDPT-ALMTDP 145
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 281 APIIIAITNPRPAPSDAPTAAAVTDPS 361 AP +T P P+P+DAP+ A + P+ Sbjct: 341 APAPEPVTAPTPSPADAPSPTAASPPA 367
>PRS8_DROME (O18413) 26S protease regulatory subunit 8| Length = 405 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ G+R + LFV H Sbjct: 214 SGSELVQKFIGEGSRMVRELFVMAREH 240
>EXON_PRVN3 (P30660) Alkaline exonuclease (EC 3.1.11.-) (Fragment)| Length = 150 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +2 Query: 257 HGFRRVDAAPIIIAITNPRPAPSDAPTAAA 346 HG DAA P PAP+ P AAA Sbjct: 54 HGLAAPDAAAAAFGGARPPPAPAGVPAAAA 83
>DPOE_CRYNE (Q5K9M7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2250 Score = 27.3 bits (59), Expect = 9.1 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = -3 Query: 376 EPTKKRWICHSC 341 EP +K W+CH C Sbjct: 2148 EPARKNWVCHKC 2159
>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)| Length = 402 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 144 SSSELVFKFLFSGARKIPNLFVNTHAH 64 S SELV KF+ G+R + LFV H Sbjct: 211 SGSELVQKFIGEGSRMVRELFVMAREH 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,621,323 Number of Sequences: 219361 Number of extensions: 1067431 Number of successful extensions: 2753 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2742 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
