>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
             xilon1 retrotransposon, helitron B73_14578, gypsy
             retrotransposon huck1 and ruda retrotransposon, complete
             sequence
          Length = 152384

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   agatcatgaggagtatctcca 344
             |||||||||||||||||||||
Sbjct: 63603 agatcatgaggagtatctcca 63583



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   agatcatgaggagtatctcca 344
             |||||||||||||||||||||
Sbjct: 62530 agatcatgaggagtatctcca 62510

>gb|AC123848.4| Mus musculus BAC clone RP23-459I1 from chromosome 5, complete sequence
          Length = 184292

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    agtatctccattgctccgcag 355
              |||||||||||||||||||||
Sbjct: 110892 agtatctccattgctccgcag 110872

>gb|AY344500.1| Streptococcus intermedius chaperonin GroEL gene, partial cds
          Length = 1452

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  tcttgaactggaggcagatgaagca 324
            ||||||||||||||| |||||||||
Sbjct: 1228 tcttgaactggaggctgatgaagca 1252

>gb|AF389515.1| Streptococcus intermedius GroES gene, complete cds; and GroEL gene,
            partial cds
          Length = 2320

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 300  tcttgaactggaggcagatgaagca 324
            ||||||||||||||| |||||||||
Sbjct: 1996 tcttgaactggaggctgatgaagca 2020

>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence
          Length = 171663

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    agtatctccattgctccgcag 355
              |||||||||||||||||||||
Sbjct: 170894 agtatctccattgctccgcag 170874

>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence
          Length = 218755

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   tttacacctgttgttttcaa 200
             ||||||||||||||||||||
Sbjct: 35718 tttacacctgttgttttcaa 35737

>gb|AC150310.1| Latimeria menadoensis clone VMRC4-40C18, complete sequence
          Length = 170774

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   gatcatgcatctatctttct 224
             ||||||||||||||||||||
Sbjct: 72026 gatcatgcatctatctttct 72045

>gb|AC113305.7| Mus musculus chromosome 10, clone RP23-433H22, complete sequence
          Length = 203296

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ctatctttctgcaaaatcca 234
             ||||||||||||||||||||
Sbjct: 19032 ctatctttctgcaaaatcca 19051

>gb|AC147341.2| Pan troglodytes BAC clone CH251-31E16 from Y, complete sequence
          Length = 193163

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    attcttgaactggaggcaga 317
              ||||||||||||||||||||
Sbjct: 145526 attcttgaactggaggcaga 145545

>gb|AC146234.3| Pan troglodytes BAC clone CH251-199F20 from Y, complete sequence
          Length = 155191

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  attcttgaactggaggcaga 317
            ||||||||||||||||||||
Sbjct: 7445 attcttgaactggaggcaga 7464

>emb|CT030198.1| Platypus DNA sequence from clone XX-300J13, complete sequence
          Length = 149672

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    tgaagcagatcatgaggagt 337
              ||||||||||||||||||||
Sbjct: 142584 tgaagcagatcatgaggagt 142603

>gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, complete sequence
          Length = 189545

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    tttacacctgttgttttcaa 200
              ||||||||||||||||||||
Sbjct: 102485 tttacacctgttgttttcaa 102466

>gb|CY002204.1| Influenza A virus (A/New York/369/2005(H3N2)) segment 8, complete
           sequence
          Length = 889

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 acttccaaatttcagcttat 269
           ||||||||||||||||||||
Sbjct: 840 acttccaaatttcagcttat 859

>emb|AL050311.13|HSJ964N17 Human DNA sequence from clone RP5-964N17 on chromosome Xq22.3-24
             Contains a novel gene, complete sequence
          Length = 63437

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   caaatttcagcttatcatac 274
             ||||||||||||||||||||
Sbjct: 41694 caaatttcagcttatcatac 41675

>gb|AC099573.15| Mus musculus chromosome 7, clone RP23-28E6, complete sequence
          Length = 212811

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 54     tttgggtaatgtgatggtattttt 77
              |||| |||||||||||||||||||
Sbjct: 121514 tttgtgtaatgtgatggtattttt 121537

>emb|AL683843.9| Mouse DNA sequence from clone RP23-217E1 on chromosome 11 Contains part
             of the Ranbp17 gene for RAN binding protein 17, an acidic
             (leucine-rich) nuclear phosphoprotein 32 family, member E
             (Anp32e) pseudogene and a high mobility group box 1
             (Hmgb1) pseudogene, complete sequence
          Length = 198926

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    atcacagatgtctaggctactgaa 103
             ||||||||| ||||||||||||||
Sbjct: 66009 atcacagatatctaggctactgaa 65986

>gb|AC013562.6| Homo sapiens chromosome 8, clone RP11-313C15, complete sequence
          Length = 188755

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ttgtttgatgattgctactg 157
             ||||||||||||||||||||
Sbjct: 88644 ttgtttgatgattgctactg 88663

>gb|AC011480.3| Homo sapiens chromosome 19 clone CTB-124I16, complete sequence
          Length = 80878

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   ttaaacaaagcatggcatat 132
             ||||||||||||||||||||
Sbjct: 71844 ttaaacaaagcatggcatat 71825

>dbj|BS000534.1| Pan troglodytes chromosome Y clone:PTB-092H12, complete sequences
          Length = 224014

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   attcttgaactggaggcaga 317
             ||||||||||||||||||||
Sbjct: 68754 attcttgaactggaggcaga 68773

>dbj|BS000532.1| Pan troglodytes chromosome Y clone:PTB-056N15, complete sequences
          Length = 144899

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    attcttgaactggaggcaga 317
              ||||||||||||||||||||
Sbjct: 131731 attcttgaactggaggcaga 131750

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 298      attcttgaactggaggcaga 317
                ||||||||||||||||||||
Sbjct: 22900097 attcttgaactggaggcaga 22900078

>gb|AC105899.1| Drosophila melanogaster, chromosome 2L, region 22C-22C, BAC clone
             BACR11F10, complete sequence
          Length = 175115

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    actttggactttgagtgcag 35
             ||||||||||||||||||||
Sbjct: 68587 actttggactttgagtgcag 68568

>gb|AC151899.7| Mus musculus BAC clone RP24-170L4 from chromosome 7, complete
            sequence
          Length = 168239

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   tttgggtaatgtgatggtattttt 77
            |||| |||||||||||||||||||
Sbjct: 9010 tttgtgtaatgtgatggtattttt 8987

>gb|AC149130.2| Medicago truncatula chromosome 2 BAC clone mth2-193n2, complete sequence
          Length = 132313

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     aatgtgatggtatttttgca 80
              ||||||||||||||||||||
Sbjct: 125302 aatgtgatggtatttttgca 125321

>ref|NM_064006.2| Caenorhabditis elegans T06D8.10 (peroxidase) mRNA, complete cds
          Length = 4594

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 116  aacaaagcatggcatatgcttctt 139
            ||||||||||||||||||| ||||
Sbjct: 3198 aacaaagcatggcatatgcctctt 3175

>gb|AC008320.4|AC008320 Drosophila melanogaster, chromosome 2L, region 22A-22B, BAC clone
              BACR18A24, complete sequence
          Length = 160551

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     actttggactttgagtgcag 35
              ||||||||||||||||||||
Sbjct: 102658 actttggactttgagtgcag 102677

>gb|AC007561.4| Homo sapiens BAC clone RP11-394E1 from 2, complete sequence
          Length = 106093

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   ctttctgcaaaatccaagtt 238
             ||||||||||||||||||||
Sbjct: 63948 ctttctgcaaaatccaagtt 63967

>gb|AC009949.9| Homo sapiens BAC clone RP11-69J7 from 2, complete sequence
          Length = 174699

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    tcaaaatggatcatgcatct 216
              ||||||||||||||||||||
Sbjct: 168142 tcaaaatggatcatgcatct 168123

>gb|AC159142.2| Medicago truncatula chromosome 2 BAC clone mth2-145o9, complete
             sequence
          Length = 107765

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    aatgtgatggtatttttgca 80
             ||||||||||||||||||||
Sbjct: 81018 aatgtgatggtatttttgca 80999

>gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 of 83 of the complete
             sequence
          Length = 346734

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    actttggactttgagtgcag 35
             ||||||||||||||||||||
Sbjct: 29553 actttggactttgagtgcag 29572

>emb|Z49130.1|CET06D8 Caenorhabditis elegans Cosmid T06D8, complete sequence
          Length = 32009

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   aacaaagcatggcatatgcttctt 139
             ||||||||||||||||||| ||||
Sbjct: 31134 aacaaagcatggcatatgcctctt 31157

>emb|AL929344.8| Zebrafish DNA sequence from clone DKEYP-115D2, complete sequence
          Length = 190898

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     tttgagtgcagatttatact 44
              ||||||||||||||||||||
Sbjct: 140602 tttgagtgcagatttatact 140583

>emb|AL626806.14| Mouse DNA sequence from clone RP23-146I18 on chromosome 4, complete
             sequence
          Length = 165969

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   tgaactatgtgtgttaaaca 119
             ||||||||||||||||||||
Sbjct: 80553 tgaactatgtgtgttaaaca 80572


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,016,114
Number of Sequences: 3902068
Number of extensions: 4016114
Number of successful extensions: 81338
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81258
Number of HSP's gapped (non-prelim): 80
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)