ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARGC_XYLFT (Q87EL1) N-acetyl-gamma-glutamyl-phosphate reductase ... 30 2.3
2ARGC_XYLFA (Q9PEM6) N-acetyl-gamma-glutamyl-phosphate reductase ... 29 3.9
3GLND_NITWN (Q3SWE0) [Protein-PII] uridylyltransferase (EC 2.7.7.... 29 3.9
4WIS4_SCHPO (O14299) MAP kinase kinase kinase wis4 (EC 2.7.11.25)... 28 8.8

>ARGC_XYLFT (Q87EL1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 327

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 198 VSLT*NLWLNQMFHRQHTFRIYTTDFGSQPI 290
           ++LT NLWL +   R+H   +Y T + + P+
Sbjct: 219 ITLTANLWLQRPLTREHIKTLYATRYANDPL 249



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>ARGC_XYLFA (Q9PEM6) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 333

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 198 VSLT*NLWLNQMFHRQHTFRIYTTDFGSQPI 290
           ++LT NLWL +   R+H   +Y T + + P+
Sbjct: 219 ITLTANLWLQRPLTREHIKILYATRYANDPL 249



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>GLND_NITWN (Q3SWE0) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 925

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 182 EDRIHRVLDMKPVVKPNVS*ATY-LQDLHNRFWFSTY 289
           E+R HR    + +V+PNV      L+DLH  FW + Y
Sbjct: 222 EERHHRAGQSRYLVEPNVKDGKGGLRDLHTLFWIAKY 258



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>WIS4_SCHPO (O14299) MAP kinase kinase kinase wis4 (EC 2.7.11.25) (MAP kinase|
           kinase kinase wak1) (MAP kinase kinase kinase wik1)
          Length = 1401

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = +3

Query: 81  SFL*HVTNCEGASSDKECFKLTNSRLEH**DVT*RIGYTVSLT*NLWLNQMFHRQHTFRI 260
           +F+ H+      S   E  KL ++R  H   ++  + YT     NL  N  F+ QH    
Sbjct: 63  NFVSHIPLTPSHSGQSE--KLMSTRTSHSPYISPTMSYTNHSPANLTRNSSFNHQH---- 116

Query: 261 YTTDFGSQPIKFDNSVDTSHSVY 329
           Y+T   S P      +D + S Y
Sbjct: 117 YSTTLRSPPSMRGRGIDVNSSHY 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,359,995
Number of Sequences: 219361
Number of extensions: 1101846
Number of successful extensions: 1913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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