>ENH3_HUMAN (Q9N2J8) HERV-H_2q24.1 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Env protein HERV-H/p59)
           (HERV-H/env59) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 555

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +2

Query: 170 TQPIYFSTWKIGYENVPYTTKELPMLLQTSLP--RLIPLEYHPLPLEFGLHLWVLAKKQY 343
           T  + F T KI + N    TKELP+ L T  P  R+IPL   PL +  GL    +A    
Sbjct: 356 TCTLVFLTPKIQFAN---GTKELPVPLMTLTPQKRVIPL--IPLMVGLGLSASTIALSTG 410

Query: 344 VAHWLLSISPFR 379
           +A    S++ FR
Sbjct: 411 IAGISTSVTTFR 422

>AJSP1_TRINI (P22327) Acidic juvenile hormone-suppressible protein 1 precursor|
           (AJHSP1)
          Length = 624

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 265 KIDSIRVSSPSTGVWTSFVGFGQEAICGSLVTKHQPIPMFHHKIGIVI 408
           ++    V SP+   +  F+   ++ +  SLV +HQ    FHH I +V+
Sbjct: 367 RVIEANVDSPNVQYYKDFISVWKKVLGNSLVHEHQ---YFHHYIPLVV 411

>Y1318_METJA (Q58714) Hypothetical protein MJ1318|
          Length = 602

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 217 HIFVPNFPCTEIDGLGAELV---VDGEVFNKSLYRCVVYVILQ 98
           H+F+   P TE+D  G+  +   V GEV  K + +  VY+ ++
Sbjct: 58  HVFMDTMPLTELDMQGSARIAAKVAGEVTGKDMSKYNVYITVR 100

>SYC_DESVH (Q72BQ5) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 485

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 280 RVSSPSTGVWTSFVGFGQEAI---CGSLVTKHQPIPMFHHKIGIVIVYP 417
           + + P    WTS  G G+      C ++  KH P+P+  H  G  +++P
Sbjct: 184 KAAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFP 232

>ESTD_PIG (Q9GJT2) Esterase D (EC 3.1.1.1)|
          Length = 282

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265
           WK  Y    Y T+ELP L+  + P
Sbjct: 114 WKTNYRMYSYVTEELPQLINANFP 137

>ESTD_MOUSE (Q9R0P3) Esterase D (EC 3.1.1.1) (Esterase 10) (Sid 478)|
          Length = 282

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265
           WK  Y    Y T+ELP L+  + P
Sbjct: 114 WKANYRMYSYVTEELPQLINANFP 137

>ESTD_HUMAN (P10768) Esterase D (EC 3.1.1.1)|
          Length = 282

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265
           WK  Y    Y T+ELP L+  + P
Sbjct: 114 WKTNYRMYSYVTEELPQLINANFP 137

>Y415_TREPA (O83430) Hypothetical protein TP0415|
          Length = 177

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
 Frame = +1

Query: 265 KIDSIRVSSPS------TGVWTSFVGFGQEAICG 348
           K+D IRV           G+W  FVG G+E I G
Sbjct: 57  KVDDIRVKGEQHGGFLCAGMWGDFVGTGEERIAG 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,767,657
Number of Sequences: 219361
Number of extensions: 1460288
Number of successful extensions: 3334
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3334
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)