Clone Name | rbastl45d12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474G09.102 mRNA Length = 3214 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 277 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 333 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852 Query: 334 ccacgggaaccctggccacccctgtc 359 |||||||||||||| | ||||||||| Sbjct: 2851 ccacgggaaccctgactacccctgtc 2826
>ref|XM_476451.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3207 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 277 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 333 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2904 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2845 Query: 334 ccacgggaaccctggccacccctgtc 359 |||||||||||||| | ||||||||| Sbjct: 2844 ccacgggaaccctgactacccctgtc 2819
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 277 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 333 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 1277414 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 1277355 Query: 334 ccacgggaaccctggccacccctgtc 359 |||||||||||||| | ||||||||| Sbjct: 1277354 ccacgggaaccctgactacccctgtc 1277329
>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474G09 Length = 169511 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 277 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 333 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 42249 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 42190 Query: 334 ccacgggaaccctggccacccctgtc 359 |||||||||||||| | ||||||||| Sbjct: 42189 ccacgggaaccctgactacccctgtc 42164
>dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147D18, full insert sequence Length = 3206 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 277 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 333 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2903 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2844 Query: 334 ccacgggaaccctggccacccctgtc 359 |||||||||||||| | ||||||||| Sbjct: 2843 ccacgggaaccctgactacccctgtc 2818
>dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060K11, full insert sequence Length = 3214 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 277 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 333 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852 Query: 334 ccacgggaaccctggccacccctgtc 359 |||||||||||||| | ||||||||| Sbjct: 2851 ccacgggaaccctgactacccctgtc 2826
>ref|XM_463934.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2784 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 301 ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 347 ||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 2714 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 2668
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 301 ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 347 ||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 1222640 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 1222594
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 301 ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 347 ||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 53731 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 53685
>gb|BT018635.1| Zea mays clone EL01N0504B06.d mRNA sequence Length = 1657 Score = 44.1 bits (22), Expect = 0.35 Identities = 55/66 (83%) Strand = Plus / Minus Query: 282 agactggttgcgagaccttccatcctggaaccgagaaccaccaccatagccgccacggga 341 ||||||||||||| |||| ||||||| |||| ||| | ||||||||||| || ||| | Sbjct: 1331 agactggttgcgaccccttgcatcctgaaaccttgaaacgccaccatagcccccgcggta 1272 Query: 342 accctg 347 |||||| Sbjct: 1271 accctg 1266
>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3, complete sequence Length = 212865 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gaagctacaaaaatatagcaa 135 ||||||||||||||||||||| Sbjct: 27917 gaagctacaaaaatatagcaa 27897
>emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 map 22q22.2-q22.3, complete sequence Length = 164591 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gaagctacaaaaatatagcaa 135 ||||||||||||||||||||| Sbjct: 111168 gaagctacaaaaatatagcaa 111148
>gb|M27659.1|SCMESPAB S.haematobium eggshell protein gene ORFs Length = 1038 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 aaccaccaccatagccgccac 337 ||||||||||||||||||||| Sbjct: 699 aaccaccaccatagccgccac 679
>gb|M27658.1|SCMESPAA S.haematobium eggshell protein gene ORFs Length = 962 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 aaccaccaccatagccgccac 337 ||||||||||||||||||||| Sbjct: 623 aaccaccaccatagccgccac 603
>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0058P12, complete sequence Length = 173073 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 agaagctacaaaaatatagcaaac 137 |||||||||||||| ||||||||| Sbjct: 52479 agaagctacaaaaaaatagcaaac 52456
>gb|BC074471.1| Xenopus laevis cDNA clone IMAGE:6950803, partial cds Length = 1750 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 371 accaccaccatagccgccac 352
>gb|AC073193.10| Homo sapiens BAC clone RP11-175C14 from 7, complete sequence Length = 120436 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 agagcctcctctgccagcat 403 |||||||||||||||||||| Sbjct: 77407 agagcctcctctgccagcat 77388
>emb|AL355361.39| Human DNA sequence from clone RP11-58N22 on chromosome 10 Contains a CpG island, complete sequence Length = 153070 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tgcccagagcctcctctgcc 398 |||||||||||||||||||| Sbjct: 96844 tgcccagagcctcctctgcc 96825
>emb|AL928933.7| Mouse DNA sequence from clone RP23-419H6 on chromosome X, complete sequence Length = 171812 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ccctggccacccctgtcatt 362 |||||||||||||||||||| Sbjct: 166570 ccctggccacccctgtcatt 166551
>gb|S82311.1| putative glycine-rich protein {clone CHEM 11} [Zea mays=maize, cv. INRA 258, mercuric chloride-treated, leaves, mRNA Partial, 149 nt] Length = 149 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 135 accaccaccatagccgccac 116 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 87 accaccaccatagccgccac 68
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 19173996 accaccaccatagccgccac 19173977
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 agaagctacaaaaatatagcaaac 137 |||||||||||||| ||||||||| Sbjct: 4942414 agaagctacaaaaaaatagcaaac 4942437
>dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G08, full insert sequence Length = 812 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 204 accaccaccatagccgccac 185
>dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146P18, full insert sequence Length = 1027 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 452 accaccaccatagccgccac 433
>dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N14, full insert sequence Length = 1069 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 461 accaccaccatagccgccac 442
>gb|AY103756.1| Zea mays PCO151485 mRNA sequence Length = 637 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 610 accaccaccatagccgccac 629
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 agaagctacaaaaatatagcaaac 137 |||||||||||||| ||||||||| Sbjct: 4961198 agaagctacaaaaaaatagcaaac 4961221
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 19100223 accaccaccatagccgccac 19100204
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 51983 accaccaccatagccgccac 52002
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 accaccaccatagccgccac 337 |||||||||||||||||||| Sbjct: 7326 accaccaccatagccgccac 7307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,138,103 Number of Sequences: 3902068 Number of extensions: 3138103 Number of successful extensions: 87434 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87273 Number of HSP's gapped (non-prelim): 155 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)