ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 39 0.003
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 39 0.003
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 35 0.060
4UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Exci... 27 9.6
5IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E... 27 9.6

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 21/35 (60%), Positives = 21/35 (60%)
 Frame = -1

Query: 344  KMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240
            KMEVPSYRRHL              DIPLVSVYFR
Sbjct: 1017 KMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 21/35 (60%), Positives = 21/35 (60%)
 Frame = -1

Query: 344  KMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240
            KMEVPSYRRHL              DIPLVSVYFR
Sbjct: 1017 KMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 34.7 bits (78), Expect = 0.060
 Identities = 18/35 (51%), Positives = 20/35 (57%)
 Frame = -1

Query: 344  KMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240
            K++VP YRRHL              DIPLVSVYFR
Sbjct: 1019 KVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



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>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 654

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 264 DVDIVVIVILTGHHDVEMTPVRGHLHL 344
           D+DI+ + I  GH  V +  VRG  HL
Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHL 294



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>IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)|
           (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25
           kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso
           protein) (eIF(iso)4E)
          Length = 198

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 86  DHWGLIWSCYQTSRFTRHAQHHL 18
           D WGL  + +QTS+ T +A+ HL
Sbjct: 61  DFWGLHETIFQTSKLTANAEIHL 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,151,164
Number of Sequences: 219361
Number of extensions: 716773
Number of successful extensions: 1206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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