ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 420 e-114
2gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 232 6e-58
3gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence 119 6e-24
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 84 3e-13
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 84 3e-13
6dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 3e-13
7dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 3e-13
8dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 3e-13
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 84 3e-13
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 84 3e-13
11emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 84 3e-13
12emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 84 3e-13
13emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 84 3e-13
14gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 48 0.019
15ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activati... 46 0.074
16gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 46 0.074
17gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, co... 46 0.074
18dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin... 46 0.074
19gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, co... 46 0.074
20gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating e... 46 0.074
21emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Co... 46 0.074
22emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Co... 46 0.074
23emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Co... 46 0.074
24emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiqui... 44 0.29
25gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 4.6
26ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM016... 40 4.6
27ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM023... 40 4.6
28gb|AE014075.1| Escherichia coli CFT073, complete genome 40 4.6
29gb|CP000243.1| Escherichia coli UTI89, complete genome 40 4.6
30dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 4.6
31gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite s... 40 4.6
32emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragm... 40 4.6
33emb|AM236324.1| Escherichia coli genome fragment containing the ... 40 4.6 
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  420 bits (212), Expect = e-114
 Identities = 301/328 (91%), Gaps = 2/328 (0%)
 Strand = Plus / Minus

                                                                        
Query: 19   agatgatgttgtgcgt-gtcttgtgaatcgtgatgtctggtaacaactccagatcagccc 77
            |||||||||||||| | |||| |||||| || ||||||||||||||| | ||||||||||
Sbjct: 3653 agatgatgttgtgcctagtctcgtgaatagttatgtctggtaacaacccgagatcagccc 3594

                                                                        
Query: 78   ccaatgatccaatcgacatcgagacggtagaaaggaaaa-tcagtcagtaatgtggctta 136
            |||||||||| ||||||||| ||| |||||||||||||| ||||||  ||||||||||||
Sbjct: 3593 ccaatgatccgatcgacatcaagatggtagaaaggaaaaatcagtcgataatgtggctta 3534

                                                                        
Query: 137  agcccccactcagcttacagtcactaatgcaactcatgactagtcagtcgatcaggcatg 196
            ||||||||||||||||||| |||||||||| |||||||||  |||||||||||  |||||
Sbjct: 3533 agcccccactcagcttacaatcactaatgcgactcatgacatgtcagtcgatccagcatg 3474

                                                                        
Query: 197  accaaccacaagatcatgtgaacacagatgaagcgcttcttcagcggaagtagacagaca 256
            ||||||||||||||||||| ||| |||| | |||||||||||||||||||||||| ||||
Sbjct: 3473 accaaccacaagatcatgtaaacgcagaaggagcgcttcttcagcggaagtagaccgaca 3414

                                                                        
Query: 257  caagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagat 316
            |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 3413 caagtgggatgtcgacatcgttgtcgtcgtcatcctcacaggccaccacaacgtcgagat 3354

                                        
Query: 317  gacgccggtaagagggcacctccatctt 344
            ||||||||||||||||||||||||||||
Sbjct: 3353 gacgccggtaagagggcacctccatctt 3326
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>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  232 bits (117), Expect = 6e-58
 Identities = 153/165 (92%)
 Strand = Plus / Minus

                                                                        
Query: 180  tcagtcgatcaggcatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 239
            ||||| ||||| |||||||||||||||||||||| | ||| |||| | ||||||||||||
Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336

                                                                        
Query: 240  gcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 299
            |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276

                                                         
Query: 300  caccacgacgtcgagatgacgccggtaagagggcacctccatctt 344
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3275 caccacgacgtcgagatgacgccggtaagagggcacctccatctt 3231



 Score =  159 bits (80), Expect = 7e-36
 Identities = 121/132 (91%), Gaps = 2/132 (1%)
 Strand = Plus / Minus

                                                                        
Query: 19   agatgatgttgtgcgt-gtcttgtgaatcgtgatgtctggtaacaactccagatcagccc 77
            |||||||||||||| | |||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 3534 agatgatgttgtgcctagtctcgtgaatcatgatgtctggtaacaacccgagatcagccc 3475

                                                                        
Query: 78   ccaatgatccaatcgacatc-gagacggtagaaaggaaaatcagtcagtaatgtggctta 136
            |||||||||| |||||||||  ||| |||||||||||||||||||| |||||||||||||
Sbjct: 3474 ccaatgatccgatcgacatcaaagatggtagaaaggaaaatcagtcggtaatgtggctta 3415

                        
Query: 137  agcccccactca 148
            ||||||||||||
Sbjct: 3414 agcccccactca 3403
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>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence
          Length = 836

 Score =  119 bits (60), Expect = 6e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                       
Query: 241 cggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggcc 300
           |||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggcc 720

                                                   
Query: 301 accacgacgtcgagatgacgccggtaagagggcacctcca 340
           ||||| ||||| ||||| || ||||| || ||||||||||
Sbjct: 719 accacaacgtccagatggcggcggtaggaaggcacctcca 680
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                            
Query: 295    caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
              || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 312255



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 121    tcagtaatgtggcttaagcccccactcagcttacag 156
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                            
Query: 295    caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
              || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 295153



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 121    tcagtaatgtggcttaagcccccactcagcttacag 156
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
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>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
            insert sequence
          Length = 3724

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 3469 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 3410

                                                          
Query: 295  caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
            || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 3409 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 3364



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 121  tcagtaatgtggcttaagcccccactcagcttacag 156
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 3580 tcagtaatgtggcttaaacccccacttagtttacag 3545
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>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full
            insert sequence
          Length = 1533

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1362 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1303

                                                          
Query: 295  caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
            || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 1302 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 1257



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 121  tcagtaatgtggcttaagcccccactcagcttacag 156
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1473 tcagtaatgtggcttaaacccccacttagtttacag 1438
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>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full
            insert sequence
          Length = 1510

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1253 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1194

                                                          
Query: 295  caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
            || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 1193 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 1148



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 121  tcagtaatgtggcttaagcccccactcagcttacag 156
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1364 tcagtaatgtggcttaaacccccacttagtttacag 1329
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                            
Query: 295    caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
              || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 295153



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 121    tcagtaatgtggcttaagcccccactcagcttacag 156
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                            
Query: 295    caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
              || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 312255



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 121    tcagtaatgtggcttaagcccccactcagcttacag 156
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 9945 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 9886

                                                          
Query: 295  caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
            || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 9885 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 9840



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 121   tcagtaatgtggcttaagcccccactcagcttacag 156
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 10056 tcagtaatgtggcttaaacccccacttagtttacag 10021
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                         
Query: 235   cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
             ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 45201 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 45260

                                                           
Query: 295   caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
             || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 45261 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 45306



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 121   tcagtaatgtggcttaagcccccactcagcttacag 156
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 45090 tcagtaatgtggcttaaacccccacttagtttacag 45125
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 2366 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 2425

                                                          
Query: 295  caggccaccacgacgtcgagatgacgccggtaagagggcacctcca 340
            || |||||||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 2426 caagccaccaccacgtcaagatggcgccggtatgggggcacctcca 2471



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 121  tcagtaatgtggcttaagcccccactcagcttacag 156
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 2255 tcagtaatgtggcttaaacccccacttagtttacag 2290
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>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 239  agcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 298
            |||||||||| || ||||| || ||||||||||| ||||| || || || ||||| ||||
Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286

                
Query: 299  ccac 302
            ||||
Sbjct: 3285 ccac 3282
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>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110
            (ATUBA1) mRNA, complete cds
          Length = 3626

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3301

               
Query: 303  cac 305
            |||
Sbjct: 3300 cac 3298
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>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 243   gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
             |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 52943

                
Query: 303   cac 305
             |||
Sbjct: 52942 cac 52940
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>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds
          Length = 3561

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3262

               
Query: 303  cac 305
            |||
Sbjct: 3261 cac 3259
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>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme,
           complete cds, clone: RAFL22-01-B01
          Length = 474

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 243 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 149

              
Query: 303 cac 305
           |||
Sbjct: 148 cac 146
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>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds
          Length = 3243

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3178

               
Query: 303  cac 305
            |||
Sbjct: 3177 cac 3175
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>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene,
            complete cds
          Length = 3346

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3275

               
Query: 303  cac 305
            |||
Sbjct: 3274 cac 3272
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>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 646

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 243 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 331

              
Query: 303 cac 305
           |||
Sbjct: 330 cac 328
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>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1375

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 1108

               
Query: 303  cac 305
            |||
Sbjct: 1107 cac 1105
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>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 930

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 243 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 614

              
Query: 303 cac 305
           |||
Sbjct: 613 cac 611
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>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1
           (ORF), clone CanUBC-1
          Length = 807

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 277 ttgtcatcgtcatcctcacaggccac 302
           ||||||||||||||||| ||||||||
Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
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>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    acatcgttgtcatcgtcatc 290
              ||||||||||||||||||||
Sbjct: 158321 acatcgttgtcatcgtcatc 158340
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>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 267 gtcgacatcgttgtcatcgtcatc 290
           |||| |||||||||||||||||||
Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
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>ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM02379.1) partial mRNA
          Length = 3270

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  tcacaggccaccacgacgtc 311
            ||||||||||||||||||||
Sbjct: 2191 tcacaggccaccacgacgtc 2210
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      cttgtgaatcgtgatgtctg 56
               ||||||||||||||||||||
Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      cttgtgaatcgtgatgtctg 56
               ||||||||||||||||||||
Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     tgaagcgcttcttcagcgga 244
               ||||||||||||||||||||
Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
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>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 267 gtcgacatcgttgtcatcgtcatcctca 294
           |||| |||||| ||||||||||||||||
Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
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>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward
           read cpg19b9.ft1a
          Length = 264

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 gaaaggaaaatcagtcagta 126
           ||||||||||||||||||||
Sbjct: 169 gaaaggaaaatcagtcagta 188
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>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and
             pdu gene clusters, strain A0 34/86
          Length = 84189

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    cttgtgaatcgtgatgtctg 56
             ||||||||||||||||||||
Sbjct: 54791 cttgtgaatcgtgatgtctg 54810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,321,504
Number of Sequences: 3902068
Number of extensions: 2321504
Number of successful extensions: 43981
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43845
Number of HSP's gapped (non-prelim): 132
length of query: 344
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 322
effective length of database: 17,147,199,772
effective search space: 5521398326584
effective search space used: 5521398326584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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