ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF137526.1|AF137526 Gonocephalus chamaeleontinus oocyte matur... 44 0.30
2gb|AC125407.4| Mus musculus BAC clone RP23-94F17 from chromosome... 42 1.2
3gb|AC131778.3| Mus musculus BAC clone RP24-328C2 from chromosome... 42 1.2
4gb|AC122929.4| Mus musculus BAC clone RP23-12A18 from chromosome... 42 1.2
5gb|AY119610.1| Drosophila melanogaster LD34829 full insert cDNA 42 1.2
6ref|NM_166214.1| Drosophila melanogaster CG6967-RB, transcript v... 42 1.2
7ref|NM_137341.1| Drosophila melanogaster CG6967-RA, transcript v... 42 1.2
8gb|AC099032.1| Drosophila melanogaster, chromosome 2R, region 53... 42 1.2
9gb|AF137527.1|AF137527 Phrynocephalus mystaceus oocyte maturatio... 42 1.2
10gb|AF182067.1|AF182067S1 Mus musculus secretory protein BV8 (Bv8... 42 1.2
11gb|AC101851.11| Mus musculus chromosome 7, clone RP23-276E14, co... 42 1.2
12gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46... 42 1.2
13gb|AC005717.2|AC005717 Drosophila melanogaster, chromosome 2R, r... 42 1.2
14gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, com... 40 4.6
15gb|AC134406.14| Mus musculus chromosome 9, clone RP24-349J23, co... 40 4.6
16gb|AC151360.2| Xenopus tropicalis clone ISB-85C20, complete sequ... 40 4.6
17gb|AC166052.5| Mus musculus BAC clone RP24-95N16 from chromosome... 40 4.6
18gb|AC128702.4| Mus musculus BAC clone RP24-239M3 from chromosome... 40 4.6
19gb|AC131710.3| Mus musculus BAC clone RP23-187M22 from 15, compl... 40 4.6
20emb|AL512323.8| Human DNA sequence from clone RP13-445B20 on chr... 40 4.6
21gb|AC117659.7| Mus musculus, clone RP23-316N7, complete sequence 40 4.6
22gb|AC165950.1| Mus musculus BAC clone RP24-235L20 from chromosom... 40 4.6
23gb|AC079223.11| Mus musculus chromosome 1, clone RP22-318M10, co... 40 4.6
24gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosom... 40 4.6
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
26gb|AF137530.1|AF137530 Agama agama oocyte maturation factor Mos ... 40 4.6
27gb|AC090617.16| Homo sapiens chromosome 17, clone RP11-667K14, c... 40 4.6
28dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
29gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequ... 40 4.6
30gb|AC147917.2| Xenopus tropicalis clone CH216-8L20, complete seq... 40 4.6
31gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome... 40 4.6
32gb|AC158559.7| Mus musculus chromosome 1, clone RP24-300L5, comp... 40 4.6

>gb|AF137526.1|AF137526 Gonocephalus chamaeleontinus oocyte maturation factor Mos (c-mos)
           gene, partial cds
          Length = 947

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 255 gactgattgtgcatttggattt 276
           ||||||||||||||||||||||
Sbjct: 576 gactgattgtgcatttggattt 597



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>gb|AC125407.4| Mus musculus BAC clone RP23-94F17 from chromosome 5, complete sequence
          Length = 233082

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   ctgtcccttttcttatcaaac 249
             |||||||||||||||||||||
Sbjct: 57274 ctgtcccttttcttatcaaac 57294



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>gb|AC131778.3| Mus musculus BAC clone RP24-328C2 from chromosome 7, complete sequence
          Length = 175406

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    acacatgcatgtatgggcaca 93
             |||||||||||||||||||||
Sbjct: 87409 acacatgcatgtatgggcaca 87429



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>gb|AC122929.4| Mus musculus BAC clone RP23-12A18 from chromosome 6, complete sequence
          Length = 252503

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     cacacatgcatgtatgggcac 92
              |||||||||||||||||||||
Sbjct: 130191 cacacatgcatgtatgggcac 130211



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>gb|AY119610.1| Drosophila melanogaster LD34829 full insert cDNA
          Length = 3402

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 29 accaaaaaatgcaccaaacag 49
          |||||||||||||||||||||
Sbjct: 53 accaaaaaatgcaccaaacag 73



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>ref|NM_166214.1| Drosophila melanogaster CG6967-RB, transcript variant B (CG6967),
           mRNA
          Length = 3470

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 29  accaaaaaatgcaccaaacag 49
           |||||||||||||||||||||
Sbjct: 96  accaaaaaatgcaccaaacag 116



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>ref|NM_137341.1| Drosophila melanogaster CG6967-RA, transcript variant A (CG6967),
           mRNA
          Length = 3406

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 29  accaaaaaatgcaccaaacag 49
           |||||||||||||||||||||
Sbjct: 96  accaaaaaatgcaccaaacag 116



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>gb|AC099032.1| Drosophila melanogaster, chromosome 2R, region 53F-54A, BAC clone
             BACR32P08, complete sequence
          Length = 163072

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    accaaaaaatgcaccaaacag 49
             |||||||||||||||||||||
Sbjct: 70365 accaaaaaatgcaccaaacag 70385



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>gb|AF137527.1|AF137527 Phrynocephalus mystaceus oocyte maturation factor Mos (c-mos) gene,
           partial cds
          Length = 947

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 256 actgattgtgcatttggattt 276
           |||||||||||||||||||||
Sbjct: 577 actgattgtgcatttggattt 597



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>gb|AF182067.1|AF182067S1 Mus musculus secretory protein BV8 (Bv8) gene, exons 1 and 2
          Length = 12920

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 72   cacacatgcatgtatgggcac 92
            |||||||||||||||||||||
Sbjct: 6772 cacacatgcatgtatgggcac 6792



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>gb|AC101851.11| Mus musculus chromosome 7, clone RP23-276E14, complete sequence
          Length = 175088

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 73   acacatgcatgtatgggcaca 93
            |||||||||||||||||||||
Sbjct: 6852 acacatgcatgtatgggcaca 6872



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>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete
             sequence
          Length = 260337

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    accaaaaaatgcaccaaacag 49
             |||||||||||||||||||||
Sbjct: 57657 accaaaaaatgcaccaaacag 57677



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>gb|AC005717.2|AC005717 Drosophila melanogaster, chromosome 2R, region 53E6-53F4, P1 clone
             DS00078, complete sequence
          Length = 51289

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    accaaaaaatgcaccaaacag 49
             |||||||||||||||||||||
Sbjct: 22213 accaaaaaatgcaccaaacag 22193



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>gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, complete sequence
          Length = 180715

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     cacacatgcatgtatgggca 91
              ||||||||||||||||||||
Sbjct: 143237 cacacatgcatgtatgggca 143256



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>gb|AC134406.14| Mus musculus chromosome 9, clone RP24-349J23, complete sequence
          Length = 192663

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    tggaaggagggagccttgct 210
              ||||||||||||||||||||
Sbjct: 175922 tggaaggagggagccttgct 175941



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>gb|AC151360.2| Xenopus tropicalis clone ISB-85C20, complete sequence
          Length = 42471

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gagaaacccaacacacatgc 80
             ||||||||||||||||||||
Sbjct: 17495 gagaaacccaacacacatgc 17514



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>gb|AC166052.5| Mus musculus BAC clone RP24-95N16 from chromosome 9, complete sequence
          Length = 175760

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    tggaaggagggagccttgct 210
              ||||||||||||||||||||
Sbjct: 120652 tggaaggagggagccttgct 120633



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>gb|AC128702.4| Mus musculus BAC clone RP24-239M3 from chromosome 9, complete sequence
          Length = 159431

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tggaaggagggagccttgct 210
             ||||||||||||||||||||
Sbjct: 60859 tggaaggagggagccttgct 60840



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>gb|AC131710.3| Mus musculus BAC clone RP23-187M22 from 15, complete sequence
          Length = 224591

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    gcatttggatttgttggaaa 284
              ||||||||||||||||||||
Sbjct: 194819 gcatttggatttgttggaaa 194800



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>emb|AL512323.8| Human DNA sequence from clone RP13-445B20 on chromosome 6, complete
              sequence
          Length = 205043

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    ttggatttgttggaaacaaa 288
              ||||||||||||||||||||
Sbjct: 192433 ttggatttgttggaaacaaa 192414



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>gb|AC117659.7| Mus musculus, clone RP23-316N7, complete sequence
          Length = 196981

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     cacatgcatgtatgggcaca 93
              ||||||||||||||||||||
Sbjct: 115560 cacatgcatgtatgggcaca 115579



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>gb|AC165950.1| Mus musculus BAC clone RP24-235L20 from chromosome 13, complete
             sequence
          Length = 178927

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    aacacacatgcatgtatgggcaca 93
             |||||||||||||| |||||||||
Sbjct: 54549 aacacacatgcatgcatgggcaca 54572



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>gb|AC079223.11| Mus musculus chromosome 1, clone RP22-318M10, complete sequence
          Length = 137729

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    gaatccaccaaaaaatgcaccaaa 46
             |||||||||||||||| |||||||
Sbjct: 71827 gaatccaccaaaaaattcaccaaa 71850



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>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete sequence
          Length = 195710

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     cacacatgcatgtatgggca 91
              ||||||||||||||||||||
Sbjct: 165305 cacacatgcatgtatgggca 165324



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 28       caccaaaaaatgcaccaaac 47
                ||||||||||||||||||||
Sbjct: 30124557 caccaaaaaatgcaccaaac 30124538



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>gb|AF137530.1|AF137530 Agama agama oocyte maturation factor Mos (c-mos) gene, partial cds
          Length = 942

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 ctgattgtgcatttggattt 276
           ||||||||||||||||||||
Sbjct: 578 ctgattgtgcatttggattt 597



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>gb|AC090617.16| Homo sapiens chromosome 17, clone RP11-667K14, complete sequence
          Length = 204630

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    gaatccaccaaaaaatgcaccaaa 46
             |||| |||||||||||||||||||
Sbjct: 90446 gaattcaccaaaaaatgcaccaaa 90423



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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0685G12
          Length = 149155

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     caccaaaaaatgcaccaaac 47
              ||||||||||||||||||||
Sbjct: 104154 caccaaaaaatgcaccaaac 104135



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>gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequence
          Length = 55519

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gagaaacccaacacacatgc 80
             ||||||||||||||||||||
Sbjct: 10676 gagaaacccaacacacatgc 10695



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>gb|AC147917.2| Xenopus tropicalis clone CH216-8L20, complete sequence
          Length = 217217

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   ttggaaacaaaccagcatgc 297
             ||||||||||||||||||||
Sbjct: 31313 ttggaaacaaaccagcatgc 31332



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>gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome 13, complete sequence
          Length = 234110

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    cacacatgcatgtatgggca 91
             ||||||||||||||||||||
Sbjct: 15287 cacacatgcatgtatgggca 15306



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>gb|AC158559.7| Mus musculus chromosome 1, clone RP24-300L5, complete sequence
          Length = 169324

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    gaatccaccaaaaaatgcaccaaa 46
             |||||||||||||||| |||||||
Sbjct: 92407 gaatccaccaaaaaattcaccaaa 92430


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,527,754
Number of Sequences: 3902068
Number of extensions: 3527754
Number of successful extensions: 71097
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71031
Number of HSP's gapped (non-prelim): 66
length of query: 348
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 326
effective length of database: 17,147,199,772
effective search space: 5589987125672
effective search space used: 5589987125672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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