ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45d06 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 69.3 bits (168), Expect = 2e-12 Identities = 31/31 (100%), Positives = 31/31 (100%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN Sbjct: 828 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 858
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 60.5 bits (145), Expect = 1e-09 Identities = 27/31 (87%), Positives = 29/31 (93%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GPA+FPYMLLYPNTSD GAAAG+TAKGIPN Sbjct: 832 GPAEFPYMLLYPNTSDVTGAAAGITAKGIPN 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 57.4 bits (137), Expect = 1e-08 Identities = 23/32 (71%), Positives = 29/32 (90%) Frame = -2 Query: 253 IGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +GPA FPY L++PNTSD+KGAA G+TA+GIPN Sbjct: 828 VGPANFPYTLMFPNTSDNKGAAEGITARGIPN 859
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 55.5 bits (132), Expect = 4e-08 Identities = 24/32 (75%), Positives = 27/32 (84%) Frame = -2 Query: 253 IGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +GP FPY LLYPNTSD KG AAGL+A+GIPN Sbjct: 835 VGPTNFPYTLLYPNTSDLKGDAAGLSARGIPN 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 46.2 bits (108), Expect = 2e-05 Identities = 23/32 (71%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPN 158 GP K PYMLLYPNTSD K GLTA GIPN Sbjct: 842 GPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPN 873
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 36.2 bits (82), Expect = 0.023 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GPAK PY LLYP++ + GLT +GIPN Sbjct: 825 GPAKMPYTLLYPSSEE------GLTFRGIPN 849
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 35.4 bits (80), Expect = 0.039 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP K PY LLYP++ + GLT +GIPN Sbjct: 838 GPVKMPYTLLYPSSEE------GLTCRGIPN 862
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -2 Query: 253 IGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +GP + PY LLYP++ + GLT +GIPN Sbjct: 810 LGPVQLPYTLLYPSSEE------GLTFRGIPN 835
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 33.5 bits (75), Expect = 0.15 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -2 Query: 253 IGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +GP + PY LL+PN+ GLT +GIPN Sbjct: 837 LGPVQLPYTLLHPNSE-------GLTCRGIPN 861
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 33.1 bits (74), Expect = 0.19 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP + PY LLYP++ + GLT +GIPN Sbjct: 833 GPVEMPYTLLYPSSKE------GLTFRGIPN 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 32.3 bits (72), Expect = 0.33 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP PY LL+P + + GLT KGIPN Sbjct: 831 GPVNVPYTLLFPTSEE------GLTGKGIPN 855
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = -2 Query: 253 IGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +GP + PY LL+P++ + GLT +GIPN Sbjct: 835 VGPVQLPYTLLHPSSKE------GLTFRGIPN 860
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 31.2 bits (69), Expect = 0.74 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP K PY +L P D GLT +GIPN Sbjct: 833 GPVKMPYTVLLPTCEDE-----GLTFRGIPN 858
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 31.2 bits (69), Expect = 0.74 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP PY LL+P + GLT KGIPN Sbjct: 833 GPVNAPYTLLFPTSE------GGLTGKGIPN 857
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 31.2 bits (69), Expect = 0.74 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGI 164 GPAK PY LLYP++ + GLT +GI Sbjct: 719 GPAKMPYTLLYPSSEE------GLTFRGI 741
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 31.2 bits (69), Expect = 0.74 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP PY LL+P + GLT KGIPN Sbjct: 832 GPVNAPYTLLFPTSE------GGLTGKGIPN 856
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 30.8 bits (68), Expect = 0.96 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP + PY LL H+ + GLT KGIPN Sbjct: 836 GPVQLPYTLL------HRSSEEGLTFKGIPN 860
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 GP + PY LL P++ + GLT +GIPN Sbjct: 829 GPVQMPYTLLLPSSKE------GLTFRGIPN 853
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 250 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 G K PY LL+P++ G+T +GIPN Sbjct: 831 GLVKMPYTLLFPSSE------GGVTGRGIPN 855 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,943,487 Number of Sequences: 219361 Number of extensions: 517090 Number of successful extensions: 1144 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1135 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
