ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y173_UREPA (Q9PQX0) Hypothetical protein UU173 32 0.78
2EFG_STRT2 (Q5M2M6) Elongation factor G (EF-G) 30 2.9
3EFG_STRT1 (Q5LY21) Elongation factor G (EF-G) 30 2.9
4LACP_KLULA (P07921) Lactose permease 30 3.8
5EFG_STRA5 (Q8DXS7) Elongation factor G (EF-G) 30 3.8
6EFG_STRA3 (Q8E3E7) Elongation factor G (EF-G) 30 3.8
7EFG_STRA1 (Q3JZB5) Elongation factor G (EF-G) 30 3.8
8UREF_BACSB (Q07402) Urease accessory protein ureF 29 5.0
9EFG_STRP8 (P69948) Elongation factor G (EF-G) 29 6.6
10EFG_STRP6 (Q5XDW4) Elongation factor G (EF-G) 29 6.6
11EFG_STRP3 (P69947) Elongation factor G (EF-G) 29 6.6
12EFG_STRP1 (P69946) Elongation factor G (EF-G) 29 6.6
13Y282_XYLFT (Q87EM1) UPF0161 protein PD0282 29 6.6
14EFG_STRPM (Q48VB6) Elongation factor G (EF-G) 29 6.6

>Y173_UREPA (Q9PQX0) Hypothetical protein UU173|
          Length = 690

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 126 VIS*LSTYTTDLFQIIIQHNFPPTYINARHMYRDKHDMNDNDYWL 260
           VIS L  +  +L  + I+   P  +I +   Y DK D  DND+WL
Sbjct: 347 VISELLVHKQNLLALPIEQRIPNYFIPS---YNDKGDYKDNDFWL 388



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>EFG_STRT2 (Q5M2M6) Elongation factor G (EF-G)|
          Length = 693

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y++  + YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLIEAVAETDEDLMMKYLEGEEI 235



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>EFG_STRT1 (Q5LY21) Elongation factor G (EF-G)|
          Length = 693

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y++  + YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLIEAVAETDEDLMMKYLEGEEI 235



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>LACP_KLULA (P07921) Lactose permease|
          Length = 587

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 144 YSTRRSRGL*--SALVLNFVIAGQPNFVN*GGHQFFLCKHLPNIKY 13
           YST  S  L    A +LNFV++G   FVN    QF   K + NIKY
Sbjct: 452 YSTEVSTNLTRSKAQLLNFVVSGVAQFVN----QFATPKAMKNIKY 493



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>EFG_STRA5 (Q8DXS7) Elongation factor G (EF-G)|
          Length = 692

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y++  + YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEI 235



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>EFG_STRA3 (Q8E3E7) Elongation factor G (EF-G)|
          Length = 692

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y++  + YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEI 235



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>EFG_STRA1 (Q3JZB5) Elongation factor G (EF-G)|
          Length = 692

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y++  + YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEI 235



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>UREF_BACSB (Q07402) Urease accessory protein ureF|
          Length = 227

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -3

Query: 343 PSGFFTHSYGLSCGIDHIVQISLEDR*VSQ*SLSFISCLSLYMCRAFMYVGGKLCCIIIW 164
           PSG F+HS+GL   I   V    E         SF + +S+Y+ +   +  G L CI+ +
Sbjct: 16  PSGSFSHSFGLETYIQEKVITDKE---------SFKNAISVYIRKQLFFTEG-LACILAY 65

Query: 163 K 161
           +
Sbjct: 66  E 66



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>EFG_STRP8 (P69948) Elongation factor G (EF-G)|
          Length = 691

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y+     YR+K        D D  + YL  +EI
Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234



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>EFG_STRP6 (Q5XDW4) Elongation factor G (EF-G)|
          Length = 691

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y+     YR+K        D D  + YL  +EI
Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234



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>EFG_STRP3 (P69947) Elongation factor G (EF-G)|
          Length = 691

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y+     YR+K        D D  + YL  +EI
Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234



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>EFG_STRP1 (P69946) Elongation factor G (EF-G)|
          Length = 691

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y+     YR+K        D D  + YL  +EI
Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234



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>Y282_XYLFT (Q87EM1) UPF0161 protein PD0282|
          Length = 92

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 H*SLPDNNTTQFSSHIHKCTTHVQ 223
           H  +PDN +TQ +   H+CT H Q
Sbjct: 69  HDPVPDNTSTQVNPRSHRCTGHHQ 92



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>EFG_STRPM (Q48VB6) Elongation factor G (EF-G)|
          Length = 692

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284
           YT DL   I++ + P  Y+     YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,172,710
Number of Sequences: 219361
Number of extensions: 1365969
Number of successful extensions: 2400
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2400
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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