ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45d01 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | Y173_UREPA (Q9PQX0) Hypothetical protein UU173 | 32 | 0.78 | 2 | EFG_STRT2 (Q5M2M6) Elongation factor G (EF-G) | 30 | 2.9 | 3 | EFG_STRT1 (Q5LY21) Elongation factor G (EF-G) | 30 | 2.9 | 4 | LACP_KLULA (P07921) Lactose permease | 30 | 3.8 | 5 | EFG_STRA5 (Q8DXS7) Elongation factor G (EF-G) | 30 | 3.8 | 6 | EFG_STRA3 (Q8E3E7) Elongation factor G (EF-G) | 30 | 3.8 | 7 | EFG_STRA1 (Q3JZB5) Elongation factor G (EF-G) | 30 | 3.8 | 8 | UREF_BACSB (Q07402) Urease accessory protein ureF | 29 | 5.0 | 9 | EFG_STRP8 (P69948) Elongation factor G (EF-G) | 29 | 6.6 | 10 | EFG_STRP6 (Q5XDW4) Elongation factor G (EF-G) | 29 | 6.6 | 11 | EFG_STRP3 (P69947) Elongation factor G (EF-G) | 29 | 6.6 | 12 | EFG_STRP1 (P69946) Elongation factor G (EF-G) | 29 | 6.6 | 13 | Y282_XYLFT (Q87EM1) UPF0161 protein PD0282 | 29 | 6.6 | 14 | EFG_STRPM (Q48VB6) Elongation factor G (EF-G) | 29 | 6.6 |
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>Y173_UREPA (Q9PQX0) Hypothetical protein UU173| Length = 690 Score = 32.0 bits (71), Expect = 0.78 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +3 Query: 126 VIS*LSTYTTDLFQIIIQHNFPPTYINARHMYRDKHDMNDNDYWL 260 VIS L + +L + I+ P +I + Y DK D DND+WL Sbjct: 347 VISELLVHKQNLLALPIEQRIPNYFIPS---YNDKGDYKDNDFWL 388
>EFG_STRT2 (Q5M2M6) Elongation factor G (EF-G)| Length = 693 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y++ + YR+K D D + YL +EI Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLIEAVAETDEDLMMKYLEGEEI 235
>EFG_STRT1 (Q5LY21) Elongation factor G (EF-G)| Length = 693 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y++ + YR+K D D + YL +EI Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLIEAVAETDEDLMMKYLEGEEI 235
>LACP_KLULA (P07921) Lactose permease| Length = 587 Score = 29.6 bits (65), Expect = 3.8 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = -1 Query: 144 YSTRRSRGL*--SALVLNFVIAGQPNFVN*GGHQFFLCKHLPNIKY 13 YST S L A +LNFV++G FVN QF K + NIKY Sbjct: 452 YSTEVSTNLTRSKAQLLNFVVSGVAQFVN----QFATPKAMKNIKY 493
>EFG_STRA5 (Q8DXS7) Elongation factor G (EF-G)| Length = 692 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y++ + YR+K D D + YL +EI Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEI 235
>EFG_STRA3 (Q8E3E7) Elongation factor G (EF-G)| Length = 692 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y++ + YR+K D D + YL +EI Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEI 235
>EFG_STRA1 (Q3JZB5) Elongation factor G (EF-G)| Length = 692 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y++ + YR+K D D + YL +EI Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEI 235
>UREF_BACSB (Q07402) Urease accessory protein ureF| Length = 227 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = -3 Query: 343 PSGFFTHSYGLSCGIDHIVQISLEDR*VSQ*SLSFISCLSLYMCRAFMYVGGKLCCIIIW 164 PSG F+HS+GL I V E SF + +S+Y+ + + G L CI+ + Sbjct: 16 PSGSFSHSFGLETYIQEKVITDKE---------SFKNAISVYIRKQLFFTEG-LACILAY 65 Query: 163 K 161 + Sbjct: 66 E 66
>EFG_STRP8 (P69948) Elongation factor G (EF-G)| Length = 691 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y+ YR+K D D + YL +EI Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234
>EFG_STRP6 (Q5XDW4) Elongation factor G (EF-G)| Length = 691 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y+ YR+K D D + YL +EI Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234
>EFG_STRP3 (P69947) Elongation factor G (EF-G)| Length = 691 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y+ YR+K D D + YL +EI Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234
>EFG_STRP1 (P69946) Elongation factor G (EF-G)| Length = 691 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y+ YR+K D D + YL +EI Sbjct: 185 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 234
>Y282_XYLFT (Q87EM1) UPF0161 protein PD0282| Length = 92 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 152 H*SLPDNNTTQFSSHIHKCTTHVQ 223 H +PDN +TQ + H+CT H Q Sbjct: 69 HDPVPDNTSTQVNPRSHRCTGHHQ 92
>EFG_STRPM (Q48VB6) Elongation factor G (EF-G)| Length = 692 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +3 Query: 147 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 284 YT DL I++ + P Y+ YR+K D D + YL +EI Sbjct: 186 YTNDLGTDILEEDIPEEYLEQAQEYREKLIEAVAETDEDLMMKYLEGEEI 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,172,710 Number of Sequences: 219361 Number of extensions: 1365969 Number of successful extensions: 2400 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2400 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
