>gb|DQ019632.1| Triticum aestivum nuclear transportin (TRN-SR) mRNA, complete cds
          Length = 3319

 Score =  595 bits (300), Expect = e-167
 Identities = 360/380 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    gacatcaaggacatacttaatatttggcagatgtttacataaaaagaattggtggccacc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3303 gacatcaaggacatacttaatatttggcagatgtttacataaaaagaattggtggccacc 3244

                                                                        
Query: 61   tcaattcacaaagttaggctggccagctattacaaaattcaggaccagggcagatcacaa 120
            |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3243 tcaattcacaaagttaagctggccagccattacaaaattcaggaccagggcagatcacaa 3184

                                                                        
Query: 121  tccgcgtgatctcctagttgagtacgtataccactgatctcttccagataataatacaac 180
            || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3183 tcggtgtgatctcctagttgagtacgtataccactgatctcttccagataataatacaac 3124

                                                                        
Query: 181  acaattttcctcccacatacataaatgcacgacacatgtacagagacaagcacgatatga 240
            |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||
Sbjct: 3123 acaactttcctcccacatacataaatgcacgacgcatgtacagagacaaacacaaaatga 3064

                                                                        
Query: 241  atgacaatgactactggctgacctatctatcctctaaagaaatctgaacaatatgatcga 300
            ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||
Sbjct: 3063 atgacaatgactactggctgacctatctatcctctaaaagaatctgaacaatatgatgga 3004

                                                                        
Query: 301  tgccgcaactcaaaccgtatgaatgggtaaaaaatccagatggcgcacaccgactccatc 360
            ||||||||||||||||||||||| ||| || | || ||||||||| |||| ||| |||||
Sbjct: 3003 tgccgcaactcaaaccgtatgaaaggggaagatattcagatggcgtacacggacaccatc 2944

                                
Query: 361  acgggctttcaactggtctt 380
            ||||||||||||||||||||
Sbjct: 2943 acgggctttcaactggtctt 2924



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 61/66 (92%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 391  tccagtcatcatgaatgccgcggagcaagtgtgaaggttaagtcatgaggctgc-aagca 449
            ||||||||||||||||||||||||||||  |||||||  ||||||||||||||| |||||
Sbjct: 2911 tccagtcatcatgaatgccgcggagcaaccgtgaaggccaagtcatgaggctgcaaagca 2852

                  
Query: 450  gcttga 455
            ||||||
Sbjct: 2851 gcttga 2846

>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Plus

                                                                     
Query: 261   acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 316
             ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 14955 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 15006



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 171   ataatacaacacaattttcctcccacataca 201
             |||||||||||||| |||||||||| |||||
Sbjct: 14864 ataatacaacacaactttcctcccagataca 14894

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 171      ataatacaacacaattttcctcccacataca 201
                |||||||||||||| |||||||||| |||||
Sbjct: 17357415 ataatacaacacaactttcctcccagataca 17357385



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                        
Query: 261      acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 316
                ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 17357324 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 17357273

>dbj|AK102336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091A14, full
            insert sequence
          Length = 3529

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 171  ataatacaacacaattttcctcccacataca 201
            |||||||||||||| |||||||||| |||||
Sbjct: 3364 ataatacaacacaactttcctcccagataca 3334



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                    
Query: 261  acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 316
            ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 3273 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 3222

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 171      ataatacaacacaattttcctcccacataca 201
                |||||||||||||| |||||||||| |||||
Sbjct: 17366455 ataatacaacacaactttcctcccagataca 17366425



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 48/56 (85%), Gaps = 4/56 (7%)
 Strand = Plus / Minus

                                                                        
Query: 261      acctatctatcctctaaagaaatctgaacaatatgatcgatgccgcaactcaaacc 316
                ||||||||||||||| || ||||||||||| |||| |    |||||||||||||||
Sbjct: 17366364 acctatctatcctctgaacaaatctgaacagtatggt----gccgcaactcaaacc 17366313

>gb|AC092704.10| Homo sapiens chromosome 18, clone RP11-687D19, complete sequence
          Length = 185257

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 271    cctctaaagaaatctgaacaat 292
              ||||||||||||||||||||||
Sbjct: 152288 cctctaaagaaatctgaacaat 152267

>gb|AC101883.6| Mus musculus chromosome 1, clone RP23-402F17, complete sequence
          Length = 191721

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 194    cacatacataaatgcacgacacatgtaca 222
              |||||| |||||||||| |||||||||||
Sbjct: 152148 cacatagataaatgcaccacacatgtaca 152120

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 181    acaattttcctcccacatacataaa 205
              ||||||||||||| |||||||||||
Sbjct: 693488 acaattttcctccgacatacataaa 693512

>emb|BX649569.5| Human DNA sequence from clone RP11-204I2 on chromosome 9 Contains part
             of the gene for a novel protein similar to contactin
             associated protein-like 3 (CNTNAP3), complete sequence
          Length = 162657

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   tcctctaaagaaatctgaac 289
             ||||||||||||||||||||
Sbjct: 39964 tcctctaaagaaatctgaac 39945

>emb|AL162233.14| Human DNA sequence from clone RP11-292B8 on chromosome 9 Contains a
              pseudogene similar to part of contactin associated
              protein-like 3 (CNTNAP3), an RNA binding motif protein 17
              (RBM17) pseudogene and a CpG island, complete sequence
          Length = 179833

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    tcctctaaagaaatctgaac 289
              ||||||||||||||||||||
Sbjct: 102456 tcctctaaagaaatctgaac 102475

>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3
             Contains the 3' part of a novel gene, complete sequence
          Length = 88509

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    agatgtttacataaaaagaa 48
             ||||||||||||||||||||
Sbjct: 40339 agatgtttacataaaaagaa 40320

>emb|AL031658.11|HS310O13 Human DNA sequence from clone RP1-310O13 on chromosome 20q11.2 Contains
             the 3' end of the C20orf125 gene, the C20orf126 gene, the
             C20orf159 gene, the C20orf160 gene, a novel gene and four
             CpG islands, complete sequence
          Length = 162976

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    atttggcagatgtttacataaaaa 45
             |||||| |||||||||||||||||
Sbjct: 48630 atttggaagatgtttacataaaaa 48653

>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    agttaggctggccagctatt 91
             ||||||||||||||||||||
Sbjct: 92478 agttaggctggccagctatt 92459

>emb|AL844602.6| Mouse DNA sequence from clone RP24-251H18 on chromosome 4, complete
             sequence
          Length = 116028

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   atctatcctctaaagaaatc 284
             ||||||||||||||||||||
Sbjct: 16666 atctatcctctaaagaaatc 16685

>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
          Length = 136333

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   acaacacaattttcctcccacata 199
             ||||||||||||| ||||||||||
Sbjct: 54476 acaacacaatttttctcccacata 54453

>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete
             sequence
          Length = 175409

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   aactcaaaccgtatgaatgggtaa 330
             |||||||||||||| |||||||||
Sbjct: 50932 aactcaaaccgtataaatgggtaa 50955

>gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complete sequence
          Length = 193979

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   caacacaattttcctcccac 196
             ||||||||||||||||||||
Sbjct: 78470 caacacaattttcctcccac 78451

>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
              sequence
          Length = 189900

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tacttaatatttggcagatg 33
              ||||||||||||||||||||
Sbjct: 129469 tacttaatatttggcagatg 129488

>emb|BX465225.10| Zebrafish DNA sequence from clone DKEY-29F10 in linkage group 20,
              complete sequence
          Length = 186128

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ttaatatttggcagatgttt 36
              ||||||||||||||||||||
Sbjct: 114098 ttaatatttggcagatgttt 114117

>gb|AY106889.1| Zea mays PCO108418 mRNA sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 258 ctgacctatctatcctctaaagaaatctgaac 289
           ||||||||||||| |||| || ||||||||||
Sbjct: 377 ctgacctatctatgctctgaacaaatctgaac 346

>emb|BX537149.1| Mouse DNA sequence from clone RP23-251H18 on chromosome 4, complete
             sequence
          Length = 112029

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   atctatcctctaaagaaatc 284
             ||||||||||||||||||||
Sbjct: 14667 atctatcctctaaagaaatc 14686

>emb|BX005035.9| Human DNA sequence from clone RP11-133G22 on chromosome 9, complete
              sequence
          Length = 146143

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    tcctctaaagaaatctgaac 289
              ||||||||||||||||||||
Sbjct: 106253 tcctctaaagaaatctgaac 106272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,311,207
Number of Sequences: 3902068
Number of extensions: 4311207
Number of successful extensions: 74722
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74618
Number of HSP's gapped (non-prelim): 104
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)