ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469973.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 1e-07
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom... 66 1e-07
5dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
6dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
7gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence 54 4e-04
8gb|AY104601.1| Zea mays PCO085879 mRNA sequence 54 4e-04
9emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in... 44 0.37
10gb|AC125131.4| Mus musculus BAC clone RP24-310B22 from chromosom... 42 1.5
11emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chro... 42 1.5
12gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 42 1.5
13gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 42 1.5
14emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in... 42 1.5
15gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8,... 42 1.5
16dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, comple... 42 1.5
17emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chro... 42 1.5
18gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete se... 42 1.5
19gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, c... 42 1.5
20gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, comp... 40 5.8
21gb|BT016441.1| Zea mays clone Contig274 mRNA sequence 40 5.8
22gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
23gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
24ref|XM_581035.2| PREDICTED: Bos taurus similar to CG15021-PA, tr... 40 5.8
25gb|AE013103.1| Thermoanaerobacter tengcongensis MB4, section 130... 40 5.8
26gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, com... 40 5.8
27gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, compl... 40 5.8
28gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Canc... 40 5.8
29gb|AC122842.3| Mus musculus BAC clone RP23-148K14 from 1, comple... 40 5.8
30emb|CR628331.7| Zebrafish DNA sequence from clone DKEY-208C12 in... 40 5.8
31ref|XM_651790.1| Entamoeba histolytica HM-1:IMSS Sec7 domain pro... 40 5.8
32gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, co... 40 5.8
33gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, comp... 40 5.8
34emb|AL122019.28|HSJ831A12 Human DNA sequence from clone RP5-831A... 40 5.8
35emb|AL022157.1|HS323P24 Human DNA sequence from clone RP3-323P24... 40 5.8
36gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, com... 40 5.8
37emb|CR786561.14| Zebrafish DNA sequence from clone CH211-233K18 ... 40 5.8
38dbj|AK139683.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 40 5.8
39gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, com... 40 5.8
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
42gb|AC020589.4| Homo sapiens BAC clone RP11-143G24 from 4, comple... 40 5.8
43gb|AC093639.5| Homo sapiens BAC clone RP11-315C24 from 2, comple... 40 5.8
44dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
45gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete... 40 5.8
46emb|Z82211.1|HS447N6 Human DNA sequence from clone RP3-447N6 on ... 40 5.8
47gb|AC136371.4| Mus musculus chromosome 1, clone RP23-405G16, com... 40 5.8
48ref|NR_002886.1| Mus musculus tubulin, alpha 2 pseudogene (LOC62... 40 5.8
49gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence 40 5.8
50emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on ch... 40 5.8
51gb|AC161527.18| Mus musculus chromosome 3, clone RP23-174B21, co... 40 5.8 
>ref|XM_469973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2851

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 117  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 175
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2716 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2658

                                             
Query: 176  gcttcccaaagagtacagcttattaccacctga 208
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2657 gcttccc-aagggtaaagcttattgccacctga 2626
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                            
Query: 117      aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 175
                ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 33129008 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33128950

                                                 
Query: 176      gcttcccaaagagtacagcttattaccacctga 208
                ||||||| ||| ||| |||||||| ||||||||
Sbjct: 33128949 gcttccc-aagggtaaagcttattgccacctga 33128918
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                            
Query: 117      aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 175
                ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 33219518 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33219460

                                                 
Query: 176      gcttcccaaagagtacagcttattaccacctga 208
                ||||||| ||| ||| |||||||| ||||||||
Sbjct: 33219459 gcttccc-aagggtaaagcttattgccacctga 33219428
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>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
              sequence
          Length = 144487

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                          
Query: 117    aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 175
              ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 115547 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 115605

                                               
Query: 176    gcttcccaaagagtacagcttattaccacctga 208
              ||||||| ||| ||| |||||||| ||||||||
Sbjct: 115606 gcttccc-aagggtaaagcttattgccacctga 115637
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>dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P21, full
            insert sequence
          Length = 2931

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 117  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 175
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2808 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2750

                                             
Query: 176  gcttcccaaagagtacagcttattaccacctga 208
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2749 gcttccc-aagggtaaagcttattgccacctga 2718
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>dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M08, full
            insert sequence
          Length = 3011

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/93 (87%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 117  aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 175
            ||||||||||| ||||||||||||  |||| |||||||||||  | ||||||||| ||||
Sbjct: 2876 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2818

                                             
Query: 176  gcttcccaaagagtacagcttattaccacctga 208
            ||||||| ||| ||| |||||||| ||||||||
Sbjct: 2817 gcttccc-aagggtaaagcttattgccacctga 2786
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>gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence
          Length = 1093

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 151 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 208
           ||||||||| ||||||||||||||| ||| |||||||   |||||||||| ||||||||
Sbjct: 983 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 925
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>gb|AY104601.1| Zea mays PCO085879 mRNA sequence
          Length = 1686

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 151  acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 208
            ||||||||| ||||||||||||||| ||| |||||||   |||||||||| ||||||||
Sbjct: 1421 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 1363
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>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8,
              complete sequence
          Length = 182233

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 103    tgcaaaataactagaagaaaaa 124
              ||||||||||||||||||||||
Sbjct: 159389 tgcaaaataactagaagaaaaa 159410
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>gb|AC125131.4| Mus musculus BAC clone RP24-310B22 from chromosome 5, complete sequence
          Length = 155744

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     atatttctaaattcaatgact 21
             |||||||||||||||||||||
Sbjct: 83262 atatttctaaattcaatgact 83282
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>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete
             sequence
          Length = 216921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    agtctgataaatataaatatg 69
             |||||||||||||||||||||
Sbjct: 45732 agtctgataaatataaatatg 45712
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 276     tcagaaaccacaaactttgca 296
               |||||||||||||||||||||
Sbjct: 2404555 tcagaaaccacaaactttgca 2404535
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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete
             sequence
          Length = 205862

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    agtctgataaatataaatatg 69
             |||||||||||||||||||||
Sbjct: 28527 agtctgataaatataaatatg 28547
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>emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in linkage group 17,
             complete sequence
          Length = 109705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 106   aaaataactagaagaaaaaggaata 130
             ||||||| |||||||||||||||||
Sbjct: 86074 aaaataagtagaagaaaaaggaata 86098
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>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence
          Length = 197900

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    agacctgagcttcccaaagag 188
              |||||||||||||||||||||
Sbjct: 183590 agacctgagcttcccaaagag 183570
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>dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, complete cds
          Length = 2177

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 175 agcttcccaaagagtacagct 195
           |||||||||||||||||||||
Sbjct: 688 agcttcccaaagagtacagct 708
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>emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chromosome X, complete
            sequence
          Length = 74439

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 104  gcaaaataactagaagaaaaaggaa 128
            |||||||| ||||||||||||||||
Sbjct: 5438 gcaaaatacctagaagaaaaaggaa 5414
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>gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete sequence
          Length = 3318

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 111  aactagaagaaaaaggaatat 131
            |||||||||||||||||||||
Sbjct: 2429 aactagaagaaaaaggaatat 2409
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>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence
          Length = 148280

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   agacctgagcttcccaaagag 188
             |||||||||||||||||||||
Sbjct: 29884 agacctgagcttcccaaagag 29864
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>gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, complete sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    ctgccagccaaaatggaaac 400
              ||||||||||||||||||||
Sbjct: 141737 ctgccagccaaaatggaaac 141756
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>gb|BT016441.1| Zea mays clone Contig274 mRNA sequence
          Length = 1532

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 51/59 (86%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                       
Query: 151  acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 208
            ||||||||| ||||||||||||||| |||  ||||  || |||||||||| ||||||||
Sbjct: 1430 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 1374
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>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0015A05, complete sequence
          Length = 127330

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   ggcttgctttctctctgccagcca 390
             |||||||| |||||||||||||||
Sbjct: 41020 ggcttgctgtctctctgccagcca 40997
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>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0077J22, complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 367  ggcttgctttctctctgccagcca 390
            |||||||| |||||||||||||||
Sbjct: 2654 ggcttgctgtctctctgccagcca 2631
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>ref|XM_581035.2| PREDICTED: Bos taurus similar to CG15021-PA, transcript variant 1
            (LOC504853), mRNA
          Length = 3422

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  agggtggacatgcaccgatttgag 267
            ||||||||||||||| ||||||||
Sbjct: 3290 agggtggacatgcacggatttgag 3313
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>gb|AE013103.1| Thermoanaerobacter tengcongensis MB4, section 130 of 244 of the
            complete genome
          Length = 6228

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  aactagaagaaaaaggaata 130
            ||||||||||||||||||||
Sbjct: 3604 aactagaagaaaaaggaata 3585
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>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence
          Length = 164107

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 218   gtaagtaacccaaacattgtagct 241
             ||||||||||||| ||||||||||
Sbjct: 59126 gtaagtaacccaatcattgtagct 59103
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>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence
          Length = 245784

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   aactagaagaaaaaggaata 130
             ||||||||||||||||||||
Sbjct: 75511 aactagaagaaaaaggaata 75530
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>gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 109988

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   agtctgataaatataaatat 68
            ||||||||||||||||||||
Sbjct: 5690 agtctgataaatataaatat 5709
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>gb|AC122842.3| Mus musculus BAC clone RP23-148K14 from 1, complete sequence
          Length = 209506

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 367    ggcttgctttctctctgccagcca 390
              |||||||||||||| |||||||||
Sbjct: 109543 ggcttgctttctctgtgccagcca 109566
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>emb|CR628331.7| Zebrafish DNA sequence from clone DKEY-208C12 in linkage group 17,
             complete sequence
          Length = 92644

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    tctgataaatataaatatgt 70
             ||||||||||||||||||||
Sbjct: 27093 tctgataaatataaatatgt 27112
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>ref|XM_651790.1| Entamoeba histolytica HM-1:IMSS Sec7 domain protein (7.t00042)
            partial mRNA
          Length = 4983

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  aactagaagaaaaaggaata 130
            ||||||||||||||||||||
Sbjct: 1688 aactagaagaaaaaggaata 1707
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>gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, complete sequence
          Length = 203246

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   acaaactttgcaaacatttt 304
             ||||||||||||||||||||
Sbjct: 65186 acaaactttgcaaacatttt 65167
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>gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, complete sequence
          Length = 220713

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 367    ggcttgctttctctctgccagcca 390
              |||||||||||||| |||||||||
Sbjct: 181248 ggcttgctttctctgtgccagcca 181225
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>emb|AL122019.28|HSJ831A12 Human DNA sequence from clone RP5-831A12 on chromosome 1q24.1-25.3,
             complete sequence
          Length = 110539

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   ctagaagaaaaaggaatata 132
             ||||||||||||||||||||
Sbjct: 73615 ctagaagaaaaaggaatata 73634
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>emb|AL022157.1|HS323P24 Human DNA sequence from clone RP3-323P24 on chromosome Xp11.21-11.23
             Contains the gene for spindlin-like protein 2 (SPIN2), the
             gene for a novel protein similar to SPIN2 and a novel
             gene, complete sequence
          Length = 80611

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ataaatataaatatgtactc 74
             ||||||||||||||||||||
Sbjct: 74840 ataaatataaatatgtactc 74859
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>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence
          Length = 139773

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  aactagaagaaaaaggaata 130
            ||||||||||||||||||||
Sbjct: 2875 aactagaagaaaaaggaata 2856
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>emb|CR786561.14| Zebrafish DNA sequence from clone CH211-233K18 in linkage group 13,
             complete sequence
          Length = 84641

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   tgccctacttgtctcgagtt 432
             ||||||||||||||||||||
Sbjct: 16916 tgccctacttgtctcgagtt 16935
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>dbj|AK139683.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
            clone:B020010K11 product:unclassifiable, full insert
            sequence
          Length = 3581

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  ctgccagccaaaatggaaac 400
            ||||||||||||||||||||
Sbjct: 3326 ctgccagccaaaatggaaac 3345
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>gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, complete sequence
          Length = 177509

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   ctgccagccaaaatggaaac 400
             ||||||||||||||||||||
Sbjct: 85948 ctgccagccaaaatggaaac 85929
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 367     ggcttgctttctctctgccagcca 390
               |||||||| |||||||||||||||
Sbjct: 2556134 ggcttgctgtctctctgccagcca 2556111
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 278      agaaaccacaaactttgcaaacat 301
                |||| |||||||||||||||||||
Sbjct: 18756877 agaacccacaaactttgcaaacat 18756900
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>gb|AC020589.4| Homo sapiens BAC clone RP11-143G24 from 4, complete sequence
          Length = 147185

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tgataaatataaatatgtac 72
             ||||||||||||||||||||
Sbjct: 84175 tgataaatataaatatgtac 84156
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>gb|AC093639.5| Homo sapiens BAC clone RP11-315C24 from 2, complete sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tatttctaaattcaatgact 21
             ||||||||||||||||||||
Sbjct: 68080 tatttctaaattcaatgact 68099
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>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1249E06
          Length = 126534

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 278   agaaaccacaaactttgcaaacat 301
             |||| |||||||||||||||||||
Sbjct: 78394 agaacccacaaactttgcaaacat 78417
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>gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete sequence
          Length = 205028

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    ttgcaaaataactagaagaa 121
              ||||||||||||||||||||
Sbjct: 203038 ttgcaaaataactagaagaa 203019
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>emb|Z82211.1|HS447N6 Human DNA sequence from clone RP3-447N6 on chromosome X, complete
             sequence
          Length = 132229

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ataaatataaatatgtactc 74
             ||||||||||||||||||||
Sbjct: 68832 ataaatataaatatgtactc 68813
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>gb|AC136371.4| Mus musculus chromosome 1, clone RP23-405G16, complete sequence
          Length = 225976

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 367    ggcttgctttctctctgccagcca 390
              |||||||||||||| |||||||||
Sbjct: 184568 ggcttgctttctctgtgccagcca 184591
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>ref|NR_002886.1| Mus musculus tubulin, alpha 2 pseudogene (LOC621740) on chromosome 18
          Length = 3581

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  ctgccagccaaaatggaaac 400
            ||||||||||||||||||||
Sbjct: 3326 ctgccagccaaaatggaaac 3345
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>gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence
          Length = 2855

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 51/59 (86%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                       
Query: 151  acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 208
            ||||||||| ||||||||||||||| |||  ||||  || |||||||||| ||||||||
Sbjct: 2747 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 2691
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>emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on chromosome 13, complete
              sequence
          Length = 199574

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    ttgcaaaataactagaagaa 121
              ||||||||||||||||||||
Sbjct: 163989 ttgcaaaataactagaagaa 164008
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>gb|AC161527.18| Mus musculus chromosome 3, clone RP23-174B21, complete sequence
          Length = 207130

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     ataaattaatcaaaacacca 49
              ||||||||||||||||||||
Sbjct: 194423 ataaattaatcaaaacacca 194442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,140,923
Number of Sequences: 3902068
Number of extensions: 5140923
Number of successful extensions: 129272
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 129042
Number of HSP's gapped (non-prelim): 232
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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