Clone Name | rbastl45c08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 358 ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 417 |||||| ||||||| |||||||||||| ||||||||||||| | | | ||||||||||| Sbjct: 19687761 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 19687820 Query: 418 gcctgctttctcatttgtca 437 |||| || | |||||||||| Sbjct: 19687821 gcctcctctttcatttgtca 19687840
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B21 Length = 143722 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 358 ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 417 |||||| ||||||| |||||||||||| ||||||||||||| | | | ||||||||||| Sbjct: 72217 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 72276 Query: 418 gcctgctttctcatttgtca 437 |||| || | |||||||||| Sbjct: 72277 gcctcctctttcatttgtca 72296
>dbj|AK070898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023071K08, full insert sequence Length = 4268 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 358 ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 417 |||||| ||||||| |||||||||||| ||||||||||||| | | | ||||||||||| Sbjct: 3789 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 3730 Query: 418 gcctgctttctcatttgtca 437 |||| || | |||||||||| Sbjct: 3729 gcctcctctttcatttgtca 3710
>dbj|AK059642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B09, full insert sequence Length = 1518 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 358 ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 417 |||||| ||||||| |||||||||||| ||||||||||||| | | | ||||||||||| Sbjct: 1094 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 1035 Query: 418 gcctgctttctcatttgtca 437 |||| || | |||||||||| Sbjct: 1034 gcctcctctttcatttgtca 1015
>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence Length = 170999 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 55 atttttgattacacaagcaggaaatgaa 82 |||||| ||||||||||||||||||||| Sbjct: 44406 attttttattacacaagcaggaaatgaa 44379
>gb|AC119848.8| Mus musculus chromosome 7, clone RP23-73B20, complete sequence Length = 239297 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 407 cctcgaagcttgcctgctttctc 429 ||||||||||||||||||||||| Sbjct: 111086 cctcgaagcttgcctgctttctc 111108
>gb|AC120854.15| Mus musculus chromosome 7, clone RP23-329B6, complete sequence Length = 205102 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 407 cctcgaagcttgcctgctttctc 429 ||||||||||||||||||||||| Sbjct: 6454 cctcgaagcttgcctgctttctc 6432
>emb|AL159169.14| Human DNA sequence from clone RP11-408A13 on chromosome 9 Contains a pseudogene similar to part of cell division cycle associated 4 (CDCA4) (HEPP, FLJ20764) and a pseudogene similar to part of nuclear factor I/A (NFIA), complete sequence Length = 86155 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 ttgattacacaagcaggaaatg 80 |||||||||||||||||||||| Sbjct: 23881 ttgattacacaagcaggaaatg 23902
>gb|AC147076.3| Pan troglodytes BAC clone RP43-172O18 from 7, complete sequence Length = 175186 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tacacaagcaggaaatgaagg 84 ||||||||||||||||||||| Sbjct: 9315 tacacaagcaggaaatgaagg 9335
>gb|AC146376.4| Pan troglodytes BAC clone RP43-76K24 from 7, complete sequence Length = 173021 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 tacacaagcaggaaatgaagg 84 ||||||||||||||||||||| Sbjct: 26448 tacacaagcaggaaatgaagg 26428
>gb|AC146221.3| Pan troglodytes BAC clone RP43-33B24 from 7, complete sequence Length = 127675 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 tacacaagcaggaaatgaagg 84 ||||||||||||||||||||| Sbjct: 26451 tacacaagcaggaaatgaagg 26431
>gb|AC009333.12| Homo sapiens chromosome 7 clone RP11-356G1, complete sequence Length = 180019 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tacacaagcaggaaatgaagg 84 ||||||||||||||||||||| Sbjct: 9291 tacacaagcaggaaatgaagg 9311
>gb|AC016778.3|AC016778 Homo sapiens BAC clone CTD-3055C21 from 7p15.1-p13, complete sequence Length = 140100 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 tacacaagcaggaaatgaagg 84 ||||||||||||||||||||| Sbjct: 62714 tacacaagcaggaaatgaagg 62694
>gb|AC007652.1|AC007652 Homo sapiens clone RP11-23B6 from 7p14-15, complete sequence Length = 195981 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tacacaagcaggaaatgaagg 84 ||||||||||||||||||||| Sbjct: 90314 tacacaagcaggaaatgaagg 90334
>gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.1018_N_14, complete sequence Length = 185116 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 attacacaagcaggaaatgaa 82 ||||||||||||||||||||| Sbjct: 64812 attacacaagcaggaaatgaa 64792
>gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, complete sequence Length = 278715 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 caacttcagctcctaaagatgcac 329 ||||||||||||||||||| |||| Sbjct: 239146 caacttcagctcctaaagaagcac 239123
>ref|XM_808578.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506251.30) partial mRNA Length = 1590 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 cacaacttcagctcctaaagatgc 327 |||||||||||||||| ||||||| Sbjct: 1103 cacaacttcagctcctcaagatgc 1080
>gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome 14, complete sequence Length = 244524 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ttcagctcctaaagatgcac 329 |||||||||||||||||||| Sbjct: 202335 ttcagctcctaaagatgcac 202354
>gb|AC108082.3| Homo sapiens chromosome 5 clone CTD-2011G17, complete sequence Length = 114475 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tacacaagcaggaaatgaag 83 |||||||||||||||||||| Sbjct: 71091 tacacaagcaggaaatgaag 71110
>gb|AC157773.6| Mus musculus chromosome 8, clone RP24-161L20, complete sequence Length = 179186 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 tatcccacatttaactggtgaaga 365 ||||||||||||||||| |||||| Sbjct: 44170 tatcccacatttaactgatgaaga 44147
>emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial sequence from BAC C-2577N12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158473 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 atttttgattacacaagcag 74 |||||||||||||||||||| Sbjct: 21517 atttttgattacacaagcag 21498
>gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, complete sequence Length = 188634 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 tatcccacatttaactggtgaaga 365 ||||||||||||||||| |||||| Sbjct: 126767 tatcccacatttaactgatgaaga 126744
>gb|AC124490.4| Mus musculus BAC clone RP23-453I1 from 16, complete sequence Length = 189215 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 agcaggaaatgaagggggga 89 |||||||||||||||||||| Sbjct: 27926 agcaggaaatgaagggggga 27907
>emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1124A8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155619 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 atttttgattacacaagcag 74 |||||||||||||||||||| Sbjct: 34789 atttttgattacacaagcag 34770 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,370,840 Number of Sequences: 3902068 Number of extensions: 3370840 Number of successful extensions: 60653 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60591 Number of HSP's gapped (non-prelim): 62 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)