ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45c07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF172282.1| Oryza sativa adh1-adh2 region Length = 339485 Score = 75.8 bits (38), Expect = 1e-10 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 6 aaacattcctgatactttttccactagtcaa-tatgacagcttatacagagtacagtagg 64 |||||||||||||||||||||||||| | || |||| ||||||||||| ||| |||| | Sbjct: 323186 aaacattcctgatactttttccactactaaattatggcagcttatacaaagtcaagtaag 323245 Query: 65 gctacaaagagaga 78 |||||||||||||| Sbjct: 323246 gctacaaagagaga 323259 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 |||||||||||||||||||||||| || | ||||||| Sbjct: 323364 ggagggaaaacttcttttccgggtaaggagtaacacc 323400 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Plus Query: 248 cttttaactctatctttcggtaagataaccgaggaaggtagcccagtaccatagttgcat 307 |||||||||||||||||| |||||| ||| || | ||| ||| | | ||||||||||| Sbjct: 323444 cttttaactctatctttcagtaagacaactgaagcaggcagcaaaatgccatagttgcac 323503 Query: 308 aatacaca 315 |||||||| Sbjct: 323504 aatacaca 323511
>gb|AC123523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051P13, complete sequence Length = 142241 Score = 75.8 bits (38), Expect = 1e-10 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 6 aaacattcctgatactttttccactagtcaa-tatgacagcttatacagagtacagtagg 64 |||||||||||||||||||||||||| | || |||| ||||||||||| ||| |||| | Sbjct: 10431 aaacattcctgatactttttccactactaaattatggcagcttatacaaagtcaagtaag 10372 Query: 65 gctacaaagagaga 78 |||||||||||||| Sbjct: 10371 gctacaaagagaga 10358 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 |||||||||||||||||||||||| || | ||||||| Sbjct: 10253 ggagggaaaacttcttttccgggtaaggagtaacacc 10217 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 248 cttttaactctatctttcggtaagataaccgaggaaggtagcccagtaccatagttgcat 307 |||||||||||||||||| |||||| ||| || | ||| ||| | | ||||||||||| Sbjct: 10173 cttttaactctatctttcagtaagacaactgaagcaggcagcaaaatgccatagttgcac 10114 Query: 308 aatacaca 315 |||||||| Sbjct: 10113 aatacaca 10106
>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0088N01, complete sequence Length = 123954 Score = 75.8 bits (38), Expect = 1e-10 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 6 aaacattcctgatactttttccactagtcaa-tatgacagcttatacagagtacagtagg 64 |||||||||||||||||||||||||| | || |||| ||||||||||| ||| |||| | Sbjct: 325 aaacattcctgatactttttccactactaaattatggcagcttatacaaagtcaagtaag 384 Query: 65 gctacaaagagaga 78 |||||||||||||| Sbjct: 385 gctacaaagagaga 398 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Plus Query: 6 aaacattcctgatacttttt-ccactagtcaat-atgacagcttatacagagtacagtag 63 |||||||||||||||||||| |||||| | ||| ||| ||||||||||| ||| |||| Sbjct: 20015 aaacattcctgatacttttttccactactaaattatggcagcttatacaaagtcaagtaa 20074 Query: 64 ggctacaaagagagaattctcaggcgaaga 93 ||||||||||||||||| | ||||| |||| Sbjct: 20075 ggctacaaagagagaatccccaggcaaaga 20104 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 248 cttttaactctatctttcggtaaga 272 ||||||||||||||||||||||||| Sbjct: 20272 cttttaactctatctttcggtaaga 20296 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 ||||| |||||||||||||||||| |||| ||||||| Sbjct: 20192 ggaggtaaaacttcttttccgggtaagaagtaacacc 20228 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 |||||||||||||||||||||||| || | ||||||| Sbjct: 503 ggagggaaaacttcttttccgggtaaggagtaacacc 539 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Plus Query: 248 cttttaactctatctttcggtaagataaccgaggaaggtagcccagtaccatagttgcat 307 |||||||||||||||||| |||||| ||| || | ||| ||| | | ||||||||||| Sbjct: 583 cttttaactctatctttcagtaagacaactgaagcaggcagcaaaatgccatagttgcac 642 Query: 308 aatacaca 315 |||||||| Sbjct: 643 aatacaca 650
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 1e-10 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 6 aaacattcctgatactttttccactagtcaa-tatgacagcttatacagagtacagtagg 64 |||||||||||||||||||||||||| | || |||| ||||||||||| ||| |||| | Sbjct: 5349890 aaacattcctgatactttttccactactaaattatggcagcttatacaaagtcaagtaag 5349831 Query: 65 gctacaaagagaga 78 |||||||||||||| Sbjct: 5349830 gctacaaagagaga 5349817 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Minus Query: 6 aaacattcctgatacttttt-ccactagtcaat-atgacagcttatacagagtacagtag 63 |||||||||||||||||||| |||||| | ||| ||| ||||||||||| ||| |||| Sbjct: 5330200 aaacattcctgatacttttttccactactaaattatggcagcttatacaaagtcaagtaa 5330141 Query: 64 ggctacaaagagagaattctcaggcgaaga 93 ||||||||||||||||| | ||||| |||| Sbjct: 5330140 ggctacaaagagagaatccccaggcaaaga 5330111 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 |||||||||||||||||||||||| || | ||||||| Sbjct: 5349712 ggagggaaaacttcttttccgggtaaggagtaacacc 5349676 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 ||||| |||||||||||||||||| |||| ||||||| Sbjct: 5330023 ggaggtaaaacttcttttccgggtaagaagtaacacc 5329987 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 248 cttttaactctatctttcggtaaga 272 ||||||||||||||||||||||||| Sbjct: 5329943 cttttaactctatctttcggtaaga 5329919 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 248 cttttaactctatctttcggtaagataaccgaggaaggtagcccagtaccatagttgcat 307 |||||||||||||||||| |||||| ||| || | ||| ||| | | ||||||||||| Sbjct: 5349632 cttttaactctatctttcagtaagacaactgaagcaggcagcaaaatgccatagttgcac 5349573 Query: 308 aatacaca 315 |||||||| Sbjct: 5349572 aatacaca 5349565
>dbj|AK065129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P12, full insert sequence Length = 3797 Score = 75.8 bits (38), Expect = 1e-10 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 6 aaacattcctgatactttttccactagtcaa-tatgacagcttatacagagtacagtagg 64 |||||||||||||||||||||||||| | || |||| ||||||||||| ||| |||| | Sbjct: 3793 aaacattcctgatactttttccactactaaattatggcagcttatacaaagtcaagtaag 3734 Query: 65 gctacaaagagaga 78 |||||||||||||| Sbjct: 3733 gctacaaagagaga 3720 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 |||||||||||||||||||||||| || | ||||||| Sbjct: 3615 ggagggaaaacttcttttccgggtaaggagtaacacc 3579 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 248 cttttaactctatctttcggtaagataaccgaggaaggtagcccagtaccatagttgcat 307 |||||||||||||||||| |||||| ||| || | ||| ||| | | ||||||||||| Sbjct: 3535 cttttaactctatctttcagtaagacaactgaagcaggcagcaaaatgccatagttgcac 3476 Query: 308 aatacaca 315 |||||||| Sbjct: 3475 aatacaca 3468
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 1e-10 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Minus Query: 6 aaacattcctgatactttttccactagtcaa-tatgacagcttatacagagtacagtagg 64 |||||||||||||||||||||||||| | || |||| ||||||||||| ||| |||| | Sbjct: 5416367 aaacattcctgatactttttccactactaaattatggcagcttatacaaagtcaagtaag 5416308 Query: 65 gctacaaagagaga 78 |||||||||||||| Sbjct: 5416307 gctacaaagagaga 5416294 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Minus Query: 6 aaacattcctgatacttttt-ccactagtcaat-atgacagcttatacagagtacagtag 63 |||||||||||||||||||| |||||| | ||| ||| ||||||||||| ||| |||| Sbjct: 5396677 aaacattcctgatacttttttccactactaaattatggcagcttatacaaagtcaagtaa 5396618 Query: 64 ggctacaaagagagaattctcaggcgaaga 93 ||||||||||||||||| | ||||| |||| Sbjct: 5396617 ggctacaaagagagaatccccaggcaaaga 5396588 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 |||||||||||||||||||||||| || | ||||||| Sbjct: 5416189 ggagggaaaacttcttttccgggtaaggagtaacacc 5416153 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 ||||| |||||||||||||||||| |||| ||||||| Sbjct: 5396500 ggaggtaaaacttcttttccgggtaagaagtaacacc 5396464 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 248 cttttaactctatctttcggtaaga 272 ||||||||||||||||||||||||| Sbjct: 5396420 cttttaactctatctttcggtaaga 5396396 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 248 cttttaactctatctttcggtaagataaccgaggaaggtagcccagtaccatagttgcat 307 |||||||||||||||||| |||||| ||| || | ||| ||| | | ||||||||||| Sbjct: 5416109 cttttaactctatctttcagtaagacaactgaagcaggcagcaaaatgccatagttgcac 5416050 Query: 308 aatacaca 315 |||||||| Sbjct: 5416049 aatacaca 5416042
>dbj|AK062074.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F02, full insert sequence Length = 1645 Score = 67.9 bits (34), Expect = 3e-08 Identities = 78/90 (86%), Gaps = 2/90 (2%) Strand = Plus / Minus Query: 6 aaacattcctgatacttttt-ccactagtcaat-atgacagcttatacagagtacagtag 63 |||||||||||||||||||| |||||| | ||| ||| ||||||||||| ||| |||| Sbjct: 1535 aaacattcctgatacttttttccactactaaattatggcagcttatacaaagtcaagtaa 1476 Query: 64 ggctacaaagagagaattctcaggcgaaga 93 ||||||||||||||||| | ||||| |||| Sbjct: 1475 ggctacaaagagagaatccccaggcaaaga 1446 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 ||||| |||||||||||||||||| |||| ||||||| Sbjct: 1358 ggaggtaaaacttcttttccgggtaagaagtaacacc 1322 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 taactctatctttcggtaaga 272 ||||||||||||||||||||| Sbjct: 1274 taactctatctttcggtaaga 1254
>dbj|AK065084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L16, full insert sequence Length = 4012 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 37 tatgacagcttatacagagtacagtagggctacaaagagagaattctcaggcgaaga 93 |||| ||||||||||| ||| |||| ||||||||||||||||| | ||||| |||| Sbjct: 4002 tatggcagcttatacaaagtcaagtaaggctacaaagagagaatccccaggcaaaga 3946 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ggagggaaaacttcttttccgggtgagaaataacacc 205 ||||| |||||||||||||||||| |||| ||||||| Sbjct: 3858 ggaggtaaaacttcttttccgggtaagaagtaacacc 3822 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 248 cttttaactctatctttcggtaaga 272 ||||||||||||||||||||||||| Sbjct: 3778 cttttaactctatctttcggtaaga 3754
>emb|AL662903.10| Mouse DNA sequence from clone RP23-419P16 on chromosome 11 Contain the gene for olfactory receptor MOR278-1, an olfactory receptor pseudogene, three novel genes, the gene for olfactory receptor MOR222-2, an olfactory receptor pseudogene (MOR222-4P), the gene for olfactory receptor MOR222-1, part of a novel gene, a novel gene (2810021J22Rik) and a novel zinc finger gene, complete sequence Length = 146349 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 tgcccagtgcaggcagattct 244 ||||||||||||||||||||| Sbjct: 142070 tgcccagtgcaggcagattct 142090
>gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, complete sequence Length = 181881 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 agaaataacaccaaacactg 213 |||||||||||||||||||| Sbjct: 63707 agaaataacaccaaacactg 63726
>gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone BACR07M14, complete sequence Length = 181950 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 ttctaatcttttaactctatcttt 264 |||||||||||||||| ||||||| Sbjct: 2344 ttctaatcttttaactgtatcttt 2367
>gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, region 84D-84E, BAC clone BACR11D12, complete sequence Length = 189596 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 ttctaatcttttaactctatcttt 264 |||||||||||||||| ||||||| Sbjct: 171747 ttctaatcttttaactgtatcttt 171770
>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete sequence Length = 267607 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 ttctaatcttttaactctatcttt 264 |||||||||||||||| ||||||| Sbjct: 248286 ttctaatcttttaactgtatcttt 248309
>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence Length = 162405 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ggtgcaaaggccccaatgct 406 |||||||||||||||||||| Sbjct: 58013 ggtgcaaaggccccaatgct 57994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,298,182 Number of Sequences: 3902068 Number of extensions: 3298182 Number of successful extensions: 58252 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58134 Number of HSP's gapped (non-prelim): 102 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
