ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete se... 46 0.10
2gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, co... 42 1.6
3emb|AJ131403.1|PVI131403 Potato virus A RNA complete genome, iso... 42 1.6
4gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Can... 42 1.6
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
6gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, comple... 42 1.6
7gb|AC092845.6| Homo sapiens BAC clone RP11-480J15 from 2, comple... 42 1.6
8gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079... 42 1.6
9gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complet... 42 1.6
10gb|AC007510.6|AC007510 Homo sapiens chromosome 17, clone hRPK.67... 42 1.6
11emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-8... 42 1.6
12emb|AL355076.5|CNS05TCA Human chromosome 14 DNA sequence BAC C-2... 42 1.6
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
14gb|AC092482.71| Mus musculus strain C57BL/6J clone rp23-60j11, c... 40 6.3
15gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome... 40 6.3
16gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosom... 40 6.3
17gb|AC055772.16| Mus musculus chromosome 12, clone RP23-291K4, co... 40 6.3
18gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosom... 40 6.3
19emb|AL359748.11| Human DNA sequence from clone RP11-158C4 on chr... 40 6.3
20emb|AL008715.1|HS1216H12 Human DNA sequence from clone CTC-1216H... 40 6.3
21gb|AC011504.3| Homo sapiens chromosome 19 clone CTD-2001J20, com... 40 6.3
22gb|AC136504.23| Medicago truncatula clone mth2-13m6, complete se... 40 6.3
23gb|AC104795.1| Homo sapiens BAC clone RP11-264O7 from 4, complet... 40 6.3
24gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, comple... 40 6.3
25gb|AC092333.2| Homo sapiens chromosome 5 clone RP11-195A20, comp... 40 6.3
26gb|AC012642.5| Homo sapiens chromosome 5 clone CTD-2287K1, compl... 40 6.3
27gb|AF333250.1|AF333250 Methanococcus thermolithotrophicus flagel... 40 6.3
28emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 i... 40 6.3
29gb|AC011454.6|AC011454 Homo sapiens chromosome 19 clone CTC-347E... 40 6.3
30emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chro... 40 6.3
31gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, comple... 40 6.3
32gb|AC006210.4| Homo sapiens X BAC GS1-309P15 (Genome Systems Hum... 40 6.3
33gb|AC140780.3| Mus musculus BAC clone RP24-500J16 from chromosom... 40 6.3
34emb|CT573324.3| CH251-10E6, complete sequence 40 6.3
35emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in... 40 6.3
36dbj|AP005061.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.3
37gb|AC150747.2| Mus musculus BAC clone RP23-249E15 from 5, comple... 40 6.3
38gb|AC167249.2| Mus musculus BAC clone RP23-41C8 from chromosome ... 40 6.3
39emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 i... 40 6.3
40gb|AF007560.1|AF007560 Mus musculus presenilin-1 gene, alternati... 40 6.3
41dbj|AP005136.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.3 
>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence
          Length = 114031

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 70    actggcttaccatcccaacacacacat 96
             ||||||||||||| |||||||||||||
Sbjct: 75504 actggcttaccataccaacacacacat 75478
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>gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, complete sequence
          Length = 222869

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 128   aaccaaaaaagatgaacaaatgaca 152
             ||||| |||||||||||||||||||
Sbjct: 72712 aaccagaaaagatgaacaaatgaca 72736
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>emb|AJ131403.1|PVI131403 Potato virus A RNA complete genome, isolate TamMV
          Length = 9605

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  ccatttccagtgctccactat 179
            |||||||||||||||||||||
Sbjct: 2609 ccatttccagtgctccactat 2589
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>gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178328

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   ggcacataaacattaaaaact 445
             |||||||||||||||||||||
Sbjct: 92346 ggcacataaacattaaaaact 92366
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 428      acataaacattaaaaactaga 448
                |||||||||||||||||||||
Sbjct: 16847337 acataaacattaaaaactaga 16847357
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>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence
          Length = 233877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   cactataaatatcaatggata 194
             |||||||||||||||||||||
Sbjct: 41306 cactataaatatcaatggata 41286
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>gb|AC092845.6| Homo sapiens BAC clone RP11-480J15 from 2, complete sequence
          Length = 85660

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 184  atcaatggatacctgggaggg 204
            |||||||||||||||||||||
Sbjct: 1935 atcaatggatacctgggaggg 1915
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>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete
             sequence
          Length = 147452

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 428   acataaacattaaaaactaga 448
             |||||||||||||||||||||
Sbjct: 31789 acataaacattaaaaactaga 31809
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>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence
          Length = 173169

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    atcaatggatacctgggaggg 204
              |||||||||||||||||||||
Sbjct: 173104 atcaatggatacctgggaggg 173084
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>gb|AC007510.6|AC007510 Homo sapiens chromosome 17, clone hRPK.678_P_16, complete sequence
          Length = 156420

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 425    ggcacataaacattaaaaact 445
              |||||||||||||||||||||
Sbjct: 105046 ggcacataaacattaaaaact 105026
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>emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-840I19 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  aaaaacaaagtgtcaaaccaa 133
            |||||||||||||||||||||
Sbjct: 6878 aaaaacaaagtgtcaaaccaa 6858
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>emb|AL355076.5|CNS05TCA Human chromosome 14 DNA sequence BAC C-2509G16 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 215936

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 113  aaaaacaaagtgtcaaaccaa 133
            |||||||||||||||||||||
Sbjct: 4876 aaaaacaaagtgtcaaaccaa 4896
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 428      acataaacattaaaaactaga 448
                |||||||||||||||||||||
Sbjct: 16856377 acataaacattaaaaactaga 16856397
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>gb|AC092482.71| Mus musculus strain C57BL/6J clone rp23-60j11, complete sequence
          Length = 220334

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     taccatcccaacacacacat 96
              ||||||||||||||||||||
Sbjct: 132686 taccatcccaacacacacat 132667
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>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence
          Length = 233527

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    gtaaaaagaagagacaggaa 380
              ||||||||||||||||||||
Sbjct: 228327 gtaaaaagaagagacaggaa 228346
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>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete
             sequence
          Length = 181475

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   gtaaaaagaagagacaggaa 380
             ||||||||||||||||||||
Sbjct: 74304 gtaaaaagaagagacaggaa 74285
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>gb|AC055772.16| Mus musculus chromosome 12, clone RP23-291K4, complete sequence
          Length = 168350

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    catcccaacacacacatccc 99
             ||||||||||||||||||||
Sbjct: 12059 catcccaacacacacatccc 12078
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>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete sequence
          Length = 181338

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    gtaaaaagaagagacaggaa 380
              ||||||||||||||||||||
Sbjct: 122502 gtaaaaagaagagacaggaa 122483
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>emb|AL359748.11| Human DNA sequence from clone RP11-158C4 on chromosome 13, complete
             sequence
          Length = 39764

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   cttccatttccagtgctcca 175
             ||||||||||||||||||||
Sbjct: 24124 cttccatttccagtgctcca 24143
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>emb|AL008715.1|HS1216H12 Human DNA sequence from clone CTC-1216H12 on chromosome 22, complete
             sequence
          Length = 101817

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   aagatgaacaaatgacaatg 155
             ||||||||||||||||||||
Sbjct: 53863 aagatgaacaaatgacaatg 53844
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>gb|AC011504.3| Homo sapiens chromosome 19 clone CTD-2001J20, complete sequence
          Length = 137075

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ccatcccaacacacacatcc 98
             ||||||||||||||||||||
Sbjct: 16101 ccatcccaacacacacatcc 16082
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>gb|AC136504.23| Medicago truncatula clone mth2-13m6, complete sequence
          Length = 107180

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   acatgacacatctataaaat 224
             ||||||||||||||||||||
Sbjct: 60900 acatgacacatctataaaat 60919
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>gb|AC104795.1| Homo sapiens BAC clone RP11-264O7 from 4, complete sequence
          Length = 178311

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   aaaagatgaacaaatgacaa 153
             ||||||||||||||||||||
Sbjct: 63472 aaaagatgaacaaatgacaa 63491
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>gb|AC104068.3| Homo sapiens BAC clone RP11-252F15 from 4, complete sequence
          Length = 137716

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    aaaagatgaacaaatgacaa 153
              ||||||||||||||||||||
Sbjct: 115319 aaaagatgaacaaatgacaa 115338
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>gb|AC092333.2| Homo sapiens chromosome 5 clone RP11-195A20, complete sequence
          Length = 157402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    aaaaagatgaacaaatgaca 152
              ||||||||||||||||||||
Sbjct: 148879 aaaaagatgaacaaatgaca 148898
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>gb|AC012642.5| Homo sapiens chromosome 5 clone CTD-2287K1, complete sequence
          Length = 159956

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aaaaagatgaacaaatgaca 152
             ||||||||||||||||||||
Sbjct: 57865 aaaaagatgaacaaatgaca 57846
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>gb|AF333250.1|AF333250 Methanococcus thermolithotrophicus flagella gene cluster, complete
            sequence
          Length = 11184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    attgtaattccataatttct 21
            ||||||||||||||||||||
Sbjct: 2708 attgtaattccataatttct 2689
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>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10,
             complete sequence
          Length = 132400

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   cacataaacattaaaaacta 446
             ||||||||||||||||||||
Sbjct: 98929 cacataaacattaaaaacta 98948
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>gb|AC011454.6|AC011454 Homo sapiens chromosome 19 clone CTC-347E6, complete sequence
          Length = 163120

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     ccatcccaacacacacatcc 98
              ||||||||||||||||||||
Sbjct: 157807 ccatcccaacacacacatcc 157788
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>emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chromosome 2, complete
             sequence
          Length = 148620

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   agaagagacaggaaggcccc 386
             ||||||||||||||||||||
Sbjct: 87876 agaagagacaggaaggcccc 87895
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>gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, complete sequence
          Length = 196848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 293   tacctggtcctaataaaaacaaat 316
             ||||||||||||||||||| ||||
Sbjct: 70952 tacctggtcctaataaaaaaaaat 70929
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>gb|AC006210.4| Homo sapiens X BAC GS1-309P15 (Genome Systems Human BAC Library)
             complete sequence
          Length = 185638

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   atgacacatctataaaatgtccaa 230
             ||||||||||||||| ||||||||
Sbjct: 65207 atgacacatctataatatgtccaa 65184
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>gb|AC140780.3| Mus musculus BAC clone RP24-500J16 from chromosome 5, complete sequence
          Length = 166260

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    ataaacattaaaaactagat 449
              ||||||||||||||||||||
Sbjct: 145979 ataaacattaaaaactagat 145960
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>emb|CT573324.3| CH251-10E6, complete sequence
          Length = 169419

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   atgacacatctataaaatgtccaa 230
             ||||||||||||||| ||||||||
Sbjct: 61717 atgacacatctataatatgtccaa 61694
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>emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in linkage group 19,
             complete sequence
          Length = 72609

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gagggacatgacacatctat 219
             ||||||||||||||||||||
Sbjct: 51430 gagggacatgacacatctat 51449
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>dbj|AP005061.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-419P8, complete
             sequence
          Length = 186074

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   caaaaaagatgaacaaatga 150
             ||||||||||||||||||||
Sbjct: 92281 caaaaaagatgaacaaatga 92262
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>gb|AC150747.2| Mus musculus BAC clone RP23-249E15 from 5, complete sequence
          Length = 209364

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    ataaacattaaaaactagat 449
              ||||||||||||||||||||
Sbjct: 181515 ataaacattaaaaactagat 181534
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>gb|AC167249.2| Mus musculus BAC clone RP23-41C8 from chromosome 17, complete sequence
          Length = 200132

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     taccatcccaacacacacat 96
              ||||||||||||||||||||
Sbjct: 136858 taccatcccaacacacacat 136839
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>emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 in linkage group 20,
             complete sequence
          Length = 98841

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   cacataaacattaaaaacta 446
             ||||||||||||||||||||
Sbjct: 68357 cacataaacattaaaaacta 68338
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>gb|AF007560.1|AF007560 Mus musculus presenilin-1 gene, alternatively spliced transcripts,
             complete cds
          Length = 48974

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    catcccaacacacacatccc 99
             ||||||||||||||||||||
Sbjct: 33926 catcccaacacacacatccc 33907
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>dbj|AP005136.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-715F3, complete
              sequence
          Length = 174547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    caaaaaagatgaacaaatga 150
              ||||||||||||||||||||
Sbjct: 157462 caaaaaagatgaacaaatga 157443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,055,921
Number of Sequences: 3902068
Number of extensions: 6055921
Number of successful extensions: 120221
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120029
Number of HSP's gapped (non-prelim): 192
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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