ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl45c05 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 111 bits (277), Expect = 1e-24 Identities = 58/72 (80%), Positives = 58/72 (80%) Frame = -2 Query: 455 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXX 276 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL Sbjct: 980 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDN 1039 Query: 275 XXDIPLVSVYFR 240 DIPLVSVYFR Sbjct: 1040 DVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 111 bits (277), Expect = 1e-24 Identities = 58/72 (80%), Positives = 58/72 (80%) Frame = -2 Query: 455 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXX 276 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHL Sbjct: 980 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDN 1039 Query: 275 XXDIPLVSVYFR 240 DIPLVSVYFR Sbjct: 1040 DVDIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 95.1 bits (235), Expect = 7e-20 Identities = 48/72 (66%), Positives = 54/72 (75%) Frame = -2 Query: 455 LNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXX 276 L AYSISCGTSLLYN+MF RHK+RL +KVVD+AREVAK++VP YRRHL Sbjct: 982 LTAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDEN 1041 Query: 275 XXDIPLVSVYFR 240 DIPLVSVYFR Sbjct: 1042 DVDIPLVSVYFR 1053
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%) Frame = -2 Query: 440 ISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSYRRHL 312 +S G SLLY S FP + K+RL K+ + +EV+K EVPS+ ++L Sbjct: 138 LSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNL 182
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 33.1 bits (74), Expect = 0.34 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -2 Query: 455 LNAYSISCGTSLLYNSMFPRHK--ERLDRKVVDVAREVAKMEVPSYRRHL 312 L +S G SLLY + P K ERL K+ ++ ++ K ++ +R+HL Sbjct: 940 LEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHL 989
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 32.7 bits (73), Expect = 0.45 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = -2 Query: 440 ISCGTSLLYNSMFP--RHKERLDRKVVDVAREVAKMEVPSY 324 +S G SLLY S FP + KERL+ + + + V K ++P++ Sbjct: 957 LSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAH 997
>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2) Length = 984 Score = 31.6 bits (70), Expect = 0.99 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%) Frame = +3 Query: 147 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 326 +LT++NAT S + S+ E + +DIV I L + E+ + Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353 Query: 327 RGHLHLGHLPGNINYLSVKPFLV------PGEHRVVE 419 + GH GN + +S +P +V P EH+ E Sbjct: 354 EKPILRGHNEGNQSLISAEPIVVSSDEEGPVEHKSSE 390
>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 398 Score = 30.8 bits (68), Expect = 1.7 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 329 RAPPSWPPPWQHQLP 373 + PP WPPPW Q+P Sbjct: 112 KGPPDWPPPWGVQMP 126
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 264 DVDIVVIVILTGHHDVEMTPVRGHLHLG 347 D+DI+ + I GH V + VRG HLG Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>SYY2_BACCZ (Q631P9) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 321 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 437 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACC1 (Q72Y10) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 321 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 437 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACAN (Q81XC6) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 321 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 437 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD| Length = 311 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 270 DIVVIVILTGHHDVEMTPVRGHLHLGHL 353 D+ VI L GH D+ T + HLH HL Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294
>SYY2_BACCR (Q815S0) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 420 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 321 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 437 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>MURA1_CLOTE (Q899K4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC| 2.5.1.7) (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) Length = 421 Score = 29.3 bits (64), Expect = 4.9 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = -2 Query: 437 SCGTSLLYNSMFPRHKERLDRKVVDVAREV 348 +CG ++ N++ P+H E + K++++ EV Sbjct: 248 ACGGEVIVNNVIPKHLESISAKLIEMGAEV 277
>ACUC_BACSU (P39067) Acetoin utilization protein acuC| Length = 387 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +2 Query: 317 DAGKRAPPSWPPPWQHQLPFCQAVPCAW 400 D G PP W WQ Q P A+P +W Sbjct: 323 DPGHEIPPEWIVKWQKQCPV--ALPSSW 348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,498,521 Number of Sequences: 219361 Number of extensions: 1115902 Number of successful extensions: 3268 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3263 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
