ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 8e-64
2dbj|AK061989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 8e-64
3gb|AY106585.1| Zea mays PCO110346 mRNA sequence 218 1e-53
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 178 9e-42
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 178 9e-42
6gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 178 9e-42
7gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) ... 44 0.34
8gb|AC114826.6| Mus musculus BAC clone RP24-156O12 from chromosom... 42 1.4
9emb|BX647681.1|HSM807827 Homo sapiens genomic DNA; cDNA DKFZp686... 42 1.4
10gb|AC129334.3| Mus musculus BAC clone RP23-108P9 from chromosome... 42 1.4
11gb|AC007883.3| Homo sapiens BAC clone RP11-508L23 from 2, comple... 42 1.4
12emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chr... 42 1.4
13gb|AC163437.16| Mus musculus chromosome 5, clone RP23-119I18, co... 42 1.4
14ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 pr... 40 5.4
15ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (... 40 5.4
16ref|XM_546554.2| PREDICTED: Canis familiaris similar to zinc fin... 40 5.4
17ref|XM_850556.1| PREDICTED: Canis familiaris similar to zinc fin... 40 5.4
18emb|X82464.1|MSLEGA2 M.salicifolia mRNA for legumin precursor (A2) 40 5.4
19emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.4
20emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11 40 5.4
21gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP... 40 5.4
22emb|AL669973.10| Mouse DNA sequence from clone RP23-256C17 on ch... 40 5.4 
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full
            insert sequence
          Length = 3250

 Score =  252 bits (127), Expect = 8e-64
 Identities = 226/259 (87%)
 Strand = Plus / Minus

                                                                        
Query: 123  aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 182
            |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 2886 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 2827

                                                                        
Query: 183  ctccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgcctcct 242
            |||| ||||| || | |||||| || ||||||||| || |||  || || || ||||| |
Sbjct: 2826 ctccaaagttattcgatgacactggaacactgcaattggtcattccaacacaggcctctt 2767

                                                                        
Query: 243  gagcgactgccagagcctgagagctgctgcattcgccatggctgtagctcccacaggtgc 302
            || | ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 2766 gaacaactgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgc 2707

                                                                        
Query: 303  cactcggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttctttggggc 362
            ||||||||||||| |||||||||||||||||  |||||||||||||||||||| | ||||
Sbjct: 2706 cactcggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttctctagggc 2647

                               
Query: 363  attccagacgaagtgctgg 381
            | ||||| |||||||||||
Sbjct: 2646 actccaggcgaagtgctgg 2628
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>dbj|AK061989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B09, full
            insert sequence
          Length = 1742

 Score =  252 bits (127), Expect = 8e-64
 Identities = 226/259 (87%)
 Strand = Plus / Minus

                                                                        
Query: 123  aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 182
            |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 1445 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 1386

                                                                        
Query: 183  ctccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgcctcct 242
            |||| ||||| || | |||||| || ||||||||| || |||  || || || ||||| |
Sbjct: 1385 ctccaaagttattcgatgacactggaacactgcaattggtcattccaacacaggcctctt 1326

                                                                        
Query: 243  gagcgactgccagagcctgagagctgctgcattcgccatggctgtagctcccacaggtgc 302
            || | ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 1325 gaacaactgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgc 1266

                                                                        
Query: 303  cactcggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttctttggggc 362
            ||||||||||||| |||||||||||||||||  |||||||||||||||||||| | ||||
Sbjct: 1265 cactcggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttctctagggc 1206

                               
Query: 363  attccagacgaagtgctgg 381
            | ||||| |||||||||||
Sbjct: 1205 actccaggcgaagtgctgg 1187
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>gb|AY106585.1| Zea mays PCO110346 mRNA sequence
          Length = 1036

 Score =  218 bits (110), Expect = 1e-53
 Identities = 218/254 (85%)
 Strand = Plus / Minus

                                                                       
Query: 125 acatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatct 184
           |||||||| |||||||||||||| ||  |||| ||||||||||| ||| | ||||||| |
Sbjct: 792 acatgtcacgagcatgcagcttcaactgcaaggctttttgtgacccctgtacatggattt 733

                                                                       
Query: 185 ccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgcctcctga 244
           || || |  || |  ||||| ||||| ||||| |||||||| |||| ||| |||||||||
Sbjct: 732 ccaaaataattcgacgacactggcacgctgcagctgctcactccgatgcaagcctcctga 673

                                                                       
Query: 245 gcgactgccagagcctgagagctgctgcattcgccatggctgtagctcccacaggtgcca 304
            | | ||  |||||||||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 672 acaattgagagagcctgagtgctgctgcattcgccatggctgtagcttccacatgtgcca 613

                                                                       
Query: 305 ctcggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttctttggggcat 364
           ||||||||||| ||||||||||||||||  |||||||||||||| |||||||| ||||||
Sbjct: 612 ctcggtgtcccaaagcttgcaaacttgacgctgctgatgacctggccttcttttgggcat 553

                         
Query: 365 tccagacgaagtgc 378
           ||||| ||||||||
Sbjct: 552 tccaggcgaagtgc 539
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  178 bits (90), Expect = 9e-42
 Identities = 123/134 (91%)
 Strand = Plus / Plus

                                                                           
Query: 248     actgccagagcctgagagctgctgcattcgccatggctgtagctcccacaggtgccactc 307
               ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 8167572 actgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgccactc 8167631

                                                                           
Query: 308     ggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttctttggggcattcc 367
               |||||||| |||||||||||||||||  |||||||||||||||||||| | ||||| |||
Sbjct: 8167632 ggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttctctagggcactcc 8167691

                             
Query: 368     agacgaagtgctgg 381
               || |||||||||||
Sbjct: 8167692 aggcgaagtgctgg 8167705



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 123     aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 182
               |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 8167369 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8167428

                                                  
Query: 183     ctccgaagttctttgctgacaccggcacactgcaa 217
               |||| ||||| || | |||||| || |||||||||
Sbjct: 8167429 ctccaaagttattcgatgacactggaacactgcaa 8167463
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  178 bits (90), Expect = 9e-42
 Identities = 123/134 (91%)
 Strand = Plus / Plus

                                                                           
Query: 248     actgccagagcctgagagctgctgcattcgccatggctgtagctcccacaggtgccactc 307
               ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 8165407 actgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgccactc 8165466

                                                                           
Query: 308     ggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttctttggggcattcc 367
               |||||||| |||||||||||||||||  |||||||||||||||||||| | ||||| |||
Sbjct: 8165467 ggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttctctagggcactcc 8165526

                             
Query: 368     agacgaagtgctgg 381
               || |||||||||||
Sbjct: 8165527 aggcgaagtgctgg 8165540



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 123     aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 182
               |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 8165204 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8165263

                                                  
Query: 183     ctccgaagttctttgctgacaccggcacactgcaa 217
               |||| ||||| || | |||||| || |||||||||
Sbjct: 8165264 ctccaaagttattcgatgacactggaacactgcaa 8165298
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score =  178 bits (90), Expect = 9e-42
 Identities = 123/134 (91%)
 Strand = Plus / Plus

                                                                         
Query: 248   actgccagagcctgagagctgctgcattcgccatggctgtagctcccacaggtgccactc 307
             ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 99002 actgcaagagcctgagagctgctgcattcaccatggttgtagttcccacaggtgccactc 99061

                                                                         
Query: 308   ggtgtcccgaagcttgcaaacttgatactgctgatgacctgaccttctttggggcattcc 367
             |||||||| |||||||||||||||||  |||||||||||||||||||| | ||||| |||
Sbjct: 99062 ggtgtcccaaagcttgcaaacttgatgttgctgatgacctgaccttctctagggcactcc 99121

                           
Query: 368   agacgaagtgctgg 381
             || |||||||||||
Sbjct: 99122 aggcgaagtgctgg 99135



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 123   aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 182
             |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 98799 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 98858

                                                
Query: 183   ctccgaagttctttgctgacaccggcacactgcaa 217
             |||| ||||| || | |||||| || |||||||||
Sbjct: 98859 ctccaaagttattcgatgacactggaacactgcaa 98893
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>gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) mRNA, partial cds
          Length = 2618

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 130  tcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatc 183
            |||||||||||||||||| ||  |||| || ||  | |||||||||||||||||
Sbjct: 2457 tcatgagcatgcagcttcaactgcaaggctcttgataactcctctgcatggatc 2404
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>gb|AC114826.6| Mus musculus BAC clone RP24-156O12 from chromosome 5, complete sequence
          Length = 179886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 238   ctcctgagcgactgccagagcctga 262
             |||||||| ||||||||||||||||
Sbjct: 25622 ctcctgagagactgccagagcctga 25646
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>emb|BX647681.1|HSM807827 Homo sapiens genomic DNA; cDNA DKFZp686J16112 (from clone
            DKFZp686J16112)
          Length = 5477

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 336  tgctgatgacctgaccttctt 356
            |||||||||||||||||||||
Sbjct: 1779 tgctgatgacctgaccttctt 1799
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>gb|AC129334.3| Mus musculus BAC clone RP23-108P9 from chromosome 8, complete sequence
          Length = 207032

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 238    ctcctgagcgactgccagagcctga 262
              |||||||| ||||||||||||||||
Sbjct: 145656 ctcctgagagactgccagagcctga 145632
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>gb|AC007883.3| Homo sapiens BAC clone RP11-508L23 from 2, complete sequence
          Length = 113189

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 336   tgctgatgacctgaccttctt 356
             |||||||||||||||||||||
Sbjct: 99775 tgctgatgacctgaccttctt 99755
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>emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chromosome 4, complete
             sequence
          Length = 176049

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 238   ctcctgagcgactgccagagcctga 262
             |||||||| ||||||||||||||||
Sbjct: 32189 ctcctgagagactgccagagcctga 32165
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>gb|AC163437.16| Mus musculus chromosome 5, clone RP23-119I18, complete sequence
          Length = 190996

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 238   ctcctgagcgactgccagagcctga 262
             |||||||| ||||||||||||||||
Sbjct: 81265 ctcctgagagactgccagagcctga 81241
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>ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 protein (LOC417641),
           mRNA
          Length = 1965

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   ttggaatattttattccatc 24
           ||||||||||||||||||||
Sbjct: 920 ttggaatattttattccatc 901
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>ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (INTS2), mRNA
          Length = 5076

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    ttggaatattttattccatc 24
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006
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>ref|XM_546554.2| PREDICTED: Canis familiaris similar to zinc finger, ZZ-type with EF
            hand domain 1, transcript variant 1 (LOC489436), mRNA
          Length = 8892

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  gcctgagagctgctgcattc 276
            ||||||||||||||||||||
Sbjct: 6956 gcctgagagctgctgcattc 6937
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>ref|XM_850556.1| PREDICTED: Canis familiaris similar to zinc finger, ZZ-type with EF
            hand domain 1, transcript variant 2 (LOC489436), mRNA
          Length = 8682

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  gcctgagagctgctgcattc 276
            ||||||||||||||||||||
Sbjct: 6845 gcctgagagctgctgcattc 6826
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>emb|X82464.1|MSLEGA2 M.salicifolia mRNA for legumin precursor (A2)
          Length = 1684

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 201 acaccggcacactgcaactgctca 224
           ||||||||||||| ||||||||||
Sbjct: 267 acaccggcacactccaactgctca 244
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>emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clone 9c3
          Length = 5076

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    ttggaatattttattccatc 24
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006
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>emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11
          Length = 999

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   ttggaatattttattccatc 24
           ||||||||||||||||||||
Sbjct: 406 ttggaatattttattccatc 387
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>gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-3M10, complete
              sequence
          Length = 206093

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     ttattgtttcttgcctgtttgtct 69
              |||||||| |||||||||||||||
Sbjct: 133425 ttattgttacttgcctgtttgtct 133448
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>emb|AL669973.10| Mouse DNA sequence from clone RP23-256C17 on chromosome X, complete
              sequence
          Length = 179173

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 239    tcctgagcgactgccagagcctga 262
              ||||||| ||||||||||||||||
Sbjct: 133685 tcctgagagactgccagagcctga 133708


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,913,875
Number of Sequences: 3902068
Number of extensions: 3913875
Number of successful extensions: 79686
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79634
Number of HSP's gapped (non-prelim): 51
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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