ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome... 224 2e-55
2emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like pr... 224 2e-55
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
4dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
5dbj|AK060810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
6dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for ... 224 2e-55
7gb|BT019243.1| Zea mays clone Contig916.F mRNA sequence 127 3e-26
8gb|AY108893.1| Zea mays PCO061793 mRNA sequence 125 1e-25
9gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC... 58 3e-05
10emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 1.6
13dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 ma... 40 6.3
15gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map... 40 6.3
16ref|NM_001039354.1| Mus musculus lin-7 homolog A (C. elegans) (L... 40 6.3
17ref|NM_001033223.2| Mus musculus lin-7 homolog A (C. elegans) (L... 40 6.3
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
19gb|AC166263.9| Mus musculus BAC RP23-145L7 (Roswell Park Cancer... 40 6.3
20gb|AC139512.20| Mus musculus chromosome 6, clone RP24-540G13, co... 40 6.3
21gb|AC144867.2| Xenopus tropicalis clone ISB-376E5, complete sequ... 40 6.3
22gb|AC144864.2| Xenopus tropicalis clone ISB-289E7, complete sequ... 40 6.3
23emb|BX664612.15| Zebrafish DNA sequence from clone DKEYP-78B3 in... 40 6.3
24emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in... 40 6.3
25ref|XM_673180.1| Plasmodium berghei strain ANKA hypothetical pro... 40 6.3
26gb|AC144865.2| Xenopus tropicalis clone ISB-366A10, complete seq... 40 6.3
27gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosom... 40 6.3
28emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4 40 6.3
29gb|BC085538.1| Danio rerio zgc:103517, mRNA (cDNA clone MGC:1035... 40 6.3
30emb|X60207.1|ECOEXRETB Escherichia coli protein whose overexpre... 40 6.3
31gb|AC107022.4| Homo sapiens 3 BAC RP11-417H23 (Roswell Park Canc... 40 6.3
32gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.3
33gb|AC063944.25| Homo sapiens 3 BAC RP11-446H18 (Roswell Park Can... 40 6.3
34gb|BC105965.1| Mus musculus lin-7 homolog A (C. elegans), mRNA (... 40 6.3
35dbj|AK030326.1| Mus musculus 11 days pregnant adult female ovary... 40 6.3
36dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
37gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
38ref|NM_001007341.1| Danio rerio zgc:103517 (zgc:103517), mRNA 40 6.3
39gb|M55249.1|ECO67RTDM Escherichia coli retron Ec67 Dam methylase... 40 6.3
40emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chro... 40 6.3
41emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, com... 40 6.3
42gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, com... 40 6.3
43emb|CR382296.26| Zebrafish DNA sequence from clone DKEY-121H17 i... 40 6.3
44emb|AL935206.8| Zebrafish DNA sequence from clone CH211-254A7, c... 40 6.3
45gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, com... 40 6.3
46emb|AL844863.7| Mouse DNA sequence from clone RP23-273C23 on chr... 40 6.3
47emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 40 6.3
48gb|M24363.1|ECOMSDNA E. coli multicopy single stranded DNA (msDN... 40 6.3 
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10,
             complete sequence
          Length = 134183

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                         
Query: 281   gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 340
             |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 64576 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 64517

                                                                         
Query: 341   aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 400
              |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 64516 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 64457

                                                                         
Query: 401   ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 460
             |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 64456 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 64397

                  
Query: 461   tccct 465
             |||||
Sbjct: 64396 tccct 64392
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>emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like protein Imb2
          Length = 2838

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 340
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2583 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2524

                                                                        
Query: 341  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 400
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 2523 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 2464

                                                                        
Query: 401  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 460
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 2463 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 2404

                 
Query: 461  tccct 465
            |||||
Sbjct: 2403 tccct 2399
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                            
Query: 281      gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 340
                |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 16565837 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 16565778

                                                                            
Query: 341      aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 400
                 |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 16565777 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 16565718

                                                                            
Query: 401      ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 460
                |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 16565717 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 16565658

                     
Query: 461      tccct 465
                |||||
Sbjct: 16565657 tccct 16565653
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>dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029L11, full
            insert sequence
          Length = 3150

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 340
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2887 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2828

                                                                        
Query: 341  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 400
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 2827 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 2768

                                                                        
Query: 401  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 460
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 2767 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 2708

                 
Query: 461  tccct 465
            |||||
Sbjct: 2707 tccct 2703
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>dbj|AK060810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G12, full
            insert sequence
          Length = 2038

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 340
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 1775 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 1716

                                                                        
Query: 341  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 400
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 1715 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 1656

                                                                        
Query: 401  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 460
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 1655 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 1596

                 
Query: 461  tccct 465
            |||||
Sbjct: 1595 tccct 1591
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>dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta1,
            complete cds
          Length = 3115

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 340
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2847 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2788

                                                                        
Query: 341  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagatt 400
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||
Sbjct: 2787 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcctttgagctt 2728

                                                                        
Query: 401  ggcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctca 460
            |  || |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 2727 gagccgagtgtgtccgcaagatcccccaggacagcaactgcagcctttgtcacgctctca 2668

                 
Query: 461  tccct 465
            |||||
Sbjct: 2667 tccct 2663
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>gb|BT019243.1| Zea mays clone Contig916.F mRNA sequence
          Length = 1196

 Score =  127 bits (64), Expect = 3e-26
 Identities = 109/124 (87%)
 Strand = Plus / Plus

                                                                       
Query: 342 ggcactccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagattg 401
           |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |  
Sbjct: 376 ggcactccctcaagaactcaacatggaataggtgggtcttgaacagatcctttgagctct 435

                                                                       
Query: 402 gcccaagtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcat 461
           | ||||| ||||| ||||||||||| ||||||||||| || || |||||||| || ||||
Sbjct: 436 ggccaagcgtgtctgcaagatccccaaggacagcaactgcagcctttgtcacactgtcat 495

               
Query: 462 ccct 465
           ||||
Sbjct: 496 ccct 499



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 284 tggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatcca 335
           ||||||||||||||||||| ||||   || |||||||  |||||||||||||
Sbjct: 312 tggtttatcatcccctgggcccattgtgcagtctcccgaacttcatcatcca 363
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>gb|AY108893.1| Zea mays PCO061793 mRNA sequence
          Length = 539

 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Minus

                                                                       
Query: 347 tccctcaagaactcaacatggaagaggtggctcttgaacagatccttagagattggccca 406
           ||||||||||||||||||||||| |||||| |||||||||||||||| ||| || | |||
Sbjct: 214 tccctcaagaactcaacatggaataggtgggtcttgaacagatcctttgagctttggcca 155

                                                                      
Query: 407 agtgtgtccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccct 465
           || |||||||| |||||||| ||||||||||| || || |||||||| || ||||||||
Sbjct: 154 agcgtgtccgcgagatccccaaggacagcaactgcagcctttgtcacactgtcatccct 96



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 284 tggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatcca 335
           ||||||||||||||||||| ||||   || |||||||  |||||||||||||
Sbjct: 283 tggtttatcatcccctgggcccattgtgcagtctcccgaacttcatcatcca 232
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>gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC T16O11 genomic sequence,
             complete sequence
          Length = 80381

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 413   tccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccct 465
             ||||||||||| ||||   | ||||| ||||||||||||||||||||||||||
Sbjct: 37202 tccgcaagatcacccattgctgcaaccgcggcttttgtcacgctctcatccct 37150



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 413   tccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccct 465
             ||||||||||| ||||   | ||||| ||||||||||||||||||||||||||
Sbjct: 29974 tccgcaagatcacccatcgctgcaaccgcggcttttgtcacgctctcatccct 30026
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>emb|BX824687.1|CNS0A7D7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH64ZE06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2944

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 413  tccgcaagatcccccaggacagcaacggcggcttttgtcacgctctcatccct 465
            ||||||||||| ||||   | ||||| ||||||||||||||||||||||||||
Sbjct: 2631 tccgcaagatcacccatcgctgcaaccgcggcttttgtcacgctctcatccct 2579
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 140      tactgactgactgacgctaca 160
                |||||||||||||||||||||
Sbjct: 15320277 tactgactgactgacgctaca 15320297
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 101     aaataataaaaccacccaaga 121
               |||||||||||||||||||||
Sbjct: 1904275 aaataataaaaccacccaaga 1904255
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0418B08
          Length = 165909

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 140   tactgactgactgacgctaca 160
             |||||||||||||||||||||
Sbjct: 99466 tactgactgactgacgctaca 99486
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>gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 map MAP_LOC, complete
              sequence
          Length = 118497

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 380    ttgaacagatccttagagattggc 403
              |||||||||||| |||||||||||
Sbjct: 111296 ttgaacagatccctagagattggc 111319
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>gb|AC150162.1| Solanum demissum chromosome 5 clone PGEC160O2 map MAP_LOC, complete
           sequence
          Length = 125813

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 380 ttgaacagatccttagagattggc 403
           |||||||||||| |||||||||||
Sbjct: 442 ttgaacagatccctagagattggc 465
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>ref|NM_001039354.1| Mus musculus lin-7 homolog A (C. elegans) (Lin7a), transcript variant
            1, mRNA
          Length = 5887

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  gtttatcatcccctgggtcc 305
            ||||||||||||||||||||
Sbjct: 4933 gtttatcatcccctgggtcc 4952
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>ref|NM_001033223.2| Mus musculus lin-7 homolog A (C. elegans) (Lin7a), transcript variant
            2, mRNA
          Length = 5845

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  gtttatcatcccctgggtcc 305
            ||||||||||||||||||||
Sbjct: 4891 gtttatcatcccctgggtcc 4910
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 302     gtccatgacgccgtctccctcact 325
               ||||| ||||||||||||||||||
Sbjct: 7267256 gtccaggacgccgtctccctcact 7267279
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>gb|AC166263.9| Mus musculus  BAC RP23-145L7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 191221

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 90661 aataaaaccacccaagacat 90642
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>gb|AC139512.20| Mus musculus chromosome 6, clone RP24-540G13, complete sequence
          Length = 179236

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 74241 aataaaaccacccaagacat 74260
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>gb|AC144867.2| Xenopus tropicalis clone ISB-376E5, complete sequence
          Length = 89767

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 59806 aataaaaccacccaagacat 59787
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>gb|AC144864.2| Xenopus tropicalis clone ISB-289E7, complete sequence
          Length = 71786

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 30154 aataaaaccacccaagacat 30135
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>emb|BX664612.15| Zebrafish DNA sequence from clone DKEYP-78B3 in linkage group 7,
             complete sequence
          Length = 186965

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   acccttctgttcatatgagc 191
             ||||||||||||||||||||
Sbjct: 50365 acccttctgttcatatgagc 50384
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>emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in linkage group 4,
             complete sequence
          Length = 145220

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ctccctcacttcatcatcca 335
             ||||||||||||||||||||
Sbjct: 84088 ctccctcacttcatcatcca 84107
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>ref|XM_673180.1| Plasmodium berghei strain ANKA hypothetical protein (PB000588.03.0)
            partial mRNA
          Length = 2124

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 98   tgaaaataataaaaccacccaaga 121
            |||||||||||||| |||||||||
Sbjct: 1074 tgaaaataataaaatcacccaaga 1097
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>gb|AC144865.2| Xenopus tropicalis clone ISB-366A10, complete sequence
          Length = 91163

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 45701 aataaaaccacccaagacat 45720
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>gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosome 10, complete
             sequence
          Length = 174112

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   gtttatcatcccctgggtcc 305
             ||||||||||||||||||||
Sbjct: 78785 gtttatcatcccctgggtcc 78804
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>emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4
          Length = 113880

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    gtagaatacaataataatga 34
             ||||||||||||||||||||
Sbjct: 74063 gtagaatacaataataatga 74044
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>gb|BC085538.1| Danio rerio zgc:103517, mRNA (cDNA clone MGC:103517 IMAGE:7239322),
            complete cds
          Length = 1996

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  ctccctcacttcatcatcca 335
            ||||||||||||||||||||
Sbjct: 1220 ctccctcacttcatcatcca 1201
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>emb|X60207.1|ECOEXRETB Escherichia coli  protein whose overexpression delete the retron
          Length = 4225

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  atcaataaaaccaaacatcc 234
            ||||||||||||||||||||
Sbjct: 2322 atcaataaaaccaaacatcc 2303
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>gb|AC107022.4| Homo sapiens 3 BAC RP11-417H23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 116557

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   aagacaaggtaaggtagttt 262
             ||||||||||||||||||||
Sbjct: 41511 aagacaaggtaaggtagttt 41492
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>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   gtccatgacgccgtctccctcact 325
             ||||| ||||||||||||||||||
Sbjct: 18512 gtccaggacgccgtctccctcact 18535
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>gb|AC063944.25| Homo sapiens 3 BAC RP11-446H18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180389

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   aagacaaggtaaggtagttt 262
             ||||||||||||||||||||
Sbjct: 41632 aagacaaggtaaggtagttt 41613
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>gb|BC105965.1| Mus musculus lin-7 homolog A (C. elegans), mRNA (cDNA clone
            MGC:102231 IMAGE:30620416), complete cds
          Length = 5500

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  gtttatcatcccctgggtcc 305
            ||||||||||||||||||||
Sbjct: 4516 gtttatcatcccctgggtcc 4535
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>dbj|AK030326.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
            RIKEN full-length enriched library, clone:5031438B01
            product:unclassifiable, full insert sequence
          Length = 3825

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  gtttatcatcccctgggtcc 305
            ||||||||||||||||||||
Sbjct: 2871 gtttatcatcccctgggtcc 2890
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 302     gtccatgacgccgtctccctcact 325
               ||||| ||||||||||||||||||
Sbjct: 7265151 gtccaggacgccgtctccctcact 7265174
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>gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1081D05,
             complete sequence
          Length = 99133

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   gtccatgacgccgtctccctcact 325
             ||||| ||||||||||||||||||
Sbjct: 94009 gtccaggacgccgtctccctcact 94032
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>ref|NM_001007341.1| Danio rerio zgc:103517 (zgc:103517), mRNA
          Length = 1996

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  ctccctcacttcatcatcca 335
            ||||||||||||||||||||
Sbjct: 1220 ctccctcacttcatcatcca 1201
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>gb|M55249.1|ECO67RTDM Escherichia coli retron Ec67 Dam methylase and reverse transcriptase
            genes, complete cds; and unknown genes
          Length = 11334

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  atcaataaaaccaaacatcc 234
            ||||||||||||||||||||
Sbjct: 8780 atcaataaaaccaaacatcc 8761
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>emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chromosome 2, complete
             sequence
          Length = 96360

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   catcaataaaaccaaacatc 233
             ||||||||||||||||||||
Sbjct: 60253 catcaataaaaccaaacatc 60234
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>emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, complete sequence
          Length = 231383

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ctccctcacttcatcatcca 335
             ||||||||||||||||||||
Sbjct: 42486 ctccctcacttcatcatcca 42505
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>gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, complete sequence
          Length = 196053

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 64475 aataaaaccacccaagacat 64494
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>emb|CR382296.26| Zebrafish DNA sequence from clone DKEY-121H17 in linkage group 21,
              complete sequence
          Length = 137360

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    gcttttgtcacgctctcatc 462
              ||||||||||||||||||||
Sbjct: 103757 gcttttgtcacgctctcatc 103738
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>emb|AL935206.8| Zebrafish DNA sequence from clone CH211-254A7, complete sequence
          Length = 169723

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     ttgacagactgaaaataataaaac 112
              |||| |||||||||||||||||||
Sbjct: 133318 ttgaaagactgaaaataataaaac 133295
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>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence
          Length = 196013

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tagaatacaataataatgag 35
              ||||||||||||||||||||
Sbjct: 141469 tagaatacaataataatgag 141450
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>emb|AL844863.7| Mouse DNA sequence from clone RP23-273C23 on chromosome X, complete
             sequence
          Length = 143387

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 74245 aataaaaccacccaagacat 74226
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>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
             sequence
          Length = 204214

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   aataaaaccacccaagacat 124
             ||||||||||||||||||||
Sbjct: 93771 aataaaaccacccaagacat 93752
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>gb|M24363.1|ECOMSDNA E. coli multicopy single stranded DNA (msDNA) and RNA (msdRNA) genes,
            unidentified open reading frame gene, complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  atcaataaaaccaaacatcc 234
            ||||||||||||||||||||
Sbjct: 1359 atcaataaaaccaaacatcc 1340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,127,879
Number of Sequences: 3902068
Number of extensions: 4127879
Number of successful extensions: 94586
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94351
Number of HSP's gapped (non-prelim): 235
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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