ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 44 0.17
2emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, c... 44 0.17
3gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 2.6
4gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 2.6
5emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 2.6
6gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase su... 40 2.6
7gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase su... 40 2.6
8gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase sub... 40 2.6
9gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, compl... 40 2.6
10dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 2.6
11ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 ... 40 2.6

>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
              complete sequence
          Length = 197042

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 61     ggtgaatcagagttcacaaatggtgt 86
              ||||| ||||||||||||||||||||
Sbjct: 168693 ggtgattcagagttcacaaatggtgt 168668



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>emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, complete sequence
          Length = 160710

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 61    ggtgaatcagagttcacaaatggtgt 86
             ||||| ||||||||||||||||||||
Sbjct: 56188 ggtgattcagagttcacaaatggtgt 56213



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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    tttaagctctataaatttaa 165
              ||||||||||||||||||||
Sbjct: 798940 tttaagctctataaatttaa 798959



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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     actttttaagctctataaat 161
               ||||||||||||||||||||
Sbjct: 1103611 actttttaagctctataaat 1103630



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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
             3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tttaagctctataaatttaa 165
             ||||||||||||||||||||
Sbjct: 97835 tttaagctctataaatttaa 97854



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>gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttttaagctctataaattta 164
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664



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>gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttttaagctctataaattta 164
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664



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>gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttttaagctctataaattta 164
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664



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>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence
          Length = 181663

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    agctctataaatttaaatta 169
              ||||||||||||||||||||
Sbjct: 175855 agctctataaatttaaatta 175836



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>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22
          Length = 82035

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tactttttaagctctataaa 160
             ||||||||||||||||||||
Sbjct: 24387 tactttttaagctctataaa 24368



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>ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 (ENSANGG00000003543),
            partial mRNA
          Length = 3441

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gacgacgacgagtcgaacga 194
            ||||||||||||||||||||
Sbjct: 1237 gacgacgacgagtcgaacga 1256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,751,261
Number of Sequences: 3902068
Number of extensions: 1751261
Number of successful extensions: 161846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161772
Number of HSP's gapped (non-prelim): 74
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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