ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070398.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 4e-81
2dbj|AK065765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 4e-81
3gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome... 297 1e-77
4gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 297 1e-77
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 297 1e-77
6gb|BT017487.1| Zea mays clone EL01N0412H03.c mRNA sequence 256 5e-65
7gb|BT016314.1| Zea mays clone Contig147 mRNA sequence 192 6e-46
8gb|AY107078.1| Zea mays PCO126628 mRNA sequence 52 0.001
9emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, comp... 44 0.36
10gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete s... 44 0.36
11emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 i... 44 0.36
12emb|BX936456.6| Zebrafish DNA sequence from clone DKEY-266J9 in ... 44 0.36
13gb|AC124906.3| Equus caballus clone CH241-268I16, complete sequence 44 0.36
14gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 44 0.36
15gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete se... 44 0.36
16gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequ... 44 0.36
17emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in... 44 0.36
18gb|AC148202.3| Carollia perspicillata clone 598J23, complete seq... 44 0.36
19gb|DP000020.1| Equus caballus target 1 genomic scaffold 44 0.36
20gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 44 0.36
21gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.4
22gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-... 42 1.4
23gb|AC184157.2| Pan troglodytes BAC clone CH251-31B9 from chromos... 42 1.4
24gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromo... 42 1.4
25ref|XM_573014.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 1.4
26ref|NM_031506.1| Rattus norvegicus cystic fibrosis transmembrane... 42 1.4
27gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's H... 42 1.4
28gb|AC087433.4|AC087433 Homo sapiens chromosome 15 clone RP11-101... 42 1.4
29gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 42 1.4
30gb|AC133184.3| Mus musculus BAC clone RP24-186A17 from chromosom... 42 1.4
31emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene 42 1.4
32emb|AJ307884.1|BJU307884 Brassica juncea pin1 gene, 5'UTR 42 1.4
33dbj|AP003471.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.4
34dbj|AP002847.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.4
35emb|AL935147.9| Mouse DNA sequence from clone RP23-33O19 on chro... 42 1.4
36dbj|AP004494.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.4
37gb|AC162037.2| Mus musculus chromosome 8, clone RP23-35K23, comp... 40 5.7
38gb|AY768813.1| Trachemys scripta elegans alpha-9 nicotinic acety... 40 5.7
39gb|AC095999.8| Rattus norvegicus 4 BAC CH230-12B2 (Children's Ho... 40 5.7
40gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromo... 40 5.7
41gb|AC121847.2| Mus musculus BAC clone RP24-86M13 from 3, complet... 40 5.7
42gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Canc... 40 5.7
43emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 i... 40 5.7
44emb|CR381570.12| Zebrafish DNA sequence from clone CH211-74M13 i... 40 5.7
45gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromoso... 40 5.7
46emb|BX901876.11| Zebrafish DNA sequence from clone CH211-140G2 i... 40 5.7
47emb|BX927136.11| Zebrafish DNA sequence from clone DKEY-98O11 in... 40 5.7
48gb|AC120162.6| Mus musculus chromosome 8, clone RP24-456M18, com... 40 5.7
49emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D1... 40 5.7
50gb|AC139316.4| Mus musculus BAC clone RP24-500I24 from 3, comple... 40 5.7
51emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 5.7
52emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on ch... 40 5.7 
>dbj|AK070398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048G06, full
            insert sequence
          Length = 3440

 Score =  309 bits (156), Expect = 4e-81
 Identities = 264/300 (88%)
 Strand = Plus / Minus

                                                                        
Query: 122  gaggcctcaattacctccacttgtctcttaattcctttttctcagaccaaatccaagtaa 181
            ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 3078 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 3019

                                                                        
Query: 182  cgaaaagagcagcaaccaatgcgacaatagtaattagaagaagggcataactgaattcat 241
            | | ||  ||||||||||||||  |||| || || || ||||| || || ||||| ||||
Sbjct: 3018 caacaatggcagcaaccaatgcagcaattgtgatgagtagaagcgcgtagctgaactcat 2959

                                                                        
Query: 242  ccgtgagtgaatcataggttcttgacggtgcaagccgagtgtagaagagatcaacgccat 301
            | || ||||| |||||||||||||| || |||||| |||| ||||| ||||| || ||||
Sbjct: 2958 cagttagtgagtcataggttcttgagggagcaagctgagtatagaaaagatctacaccat 2899

                                                                        
Query: 302  atgtgaaaacaagagtagtggactccaactttgcaggaatagaaacaattcctcgcaggg 361
            ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 2898 atgtgaaaacaagagtagttgactccaactttgaaggaatagaaacaattcctcgcagag 2839

                                                                        
Query: 362  cttccacttgaagagagtgtgtcacataggactgtggaatgataggcaaataatctgtta 421
            |||||||||||||||||||||||| |||||||  |||||| |||||||||  ||||||||
Sbjct: 2838 cttccacttgaagagagtgtgtcaaataggacgttggaataataggcaaagcatctgtta 2779
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>dbj|AK065765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040F09, full
            insert sequence
          Length = 2572

 Score =  309 bits (156), Expect = 4e-81
 Identities = 264/300 (88%)
 Strand = Plus / Minus

                                                                        
Query: 122  gaggcctcaattacctccacttgtctcttaattcctttttctcagaccaaatccaagtaa 181
            ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 2215 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 2156

                                                                        
Query: 182  cgaaaagagcagcaaccaatgcgacaatagtaattagaagaagggcataactgaattcat 241
            | | ||  ||||||||||||||  |||| || || || ||||| || || ||||| ||||
Sbjct: 2155 caacaatggcagcaaccaatgcagcaattgtgatgagtagaagcgcgtagctgaactcat 2096

                                                                        
Query: 242  ccgtgagtgaatcataggttcttgacggtgcaagccgagtgtagaagagatcaacgccat 301
            | || ||||| |||||||||||||| || |||||| |||| ||||| ||||| || ||||
Sbjct: 2095 cagttagtgagtcataggttcttgagggagcaagctgagtatagaaaagatctacaccat 2036

                                                                        
Query: 302  atgtgaaaacaagagtagtggactccaactttgcaggaatagaaacaattcctcgcaggg 361
            ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 2035 atgtgaaaacaagagtagttgactccaactttgaaggaatagaaacaattcctcgcagag 1976

                                                                        
Query: 362  cttccacttgaagagagtgtgtcacataggactgtggaatgataggcaaataatctgtta 421
            |||||||||||||||||||||||| |||||||  |||||| |||||||||  ||||||||
Sbjct: 1975 cttccacttgaagagagtgtgtcaaataggacgttggaataataggcaaagcatctgtta 1916
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>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06,
              complete sequence
          Length = 134001

 Score =  297 bits (150), Expect = 1e-77
 Identities = 243/274 (88%)
 Strand = Plus / Minus

                                                                          
Query: 122    gaggcctcaattacctccacttgtctcttaattcctttttctcagaccaaatccaagtaa 181
              ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 113251 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 113192

                                                                          
Query: 182    cgaaaagagcagcaaccaatgcgacaatagtaattagaagaagggcataactgaattcat 241
              | | ||  ||||||||||||||  |||| || || || ||||| || || ||||| ||||
Sbjct: 113191 caacaatggcagcaaccaatgcagcaattgtgatgagtagaagcgcgtagctgaactcat 113132

                                                                          
Query: 242    ccgtgagtgaatcataggttcttgacggtgcaagccgagtgtagaagagatcaacgccat 301
              | || ||||| |||||||||||||| || |||||| |||| ||||| ||||| || ||||
Sbjct: 113131 cagttagtgagtcataggttcttgagggagcaagctgagtatagaaaagatctacaccat 113072

                                                                          
Query: 302    atgtgaaaacaagagtagtggactccaactttgcaggaatagaaacaattcctcgcaggg 361
              ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 113071 atgtgaaaacaagagtagttgactccaactttgaaggaatagaaacaattcctcgcagag 113012

                                                
Query: 362    cttccacttgaagagagtgtgtcacataggactg 395
              |||||||||||||||||||||||| |||||||||
Sbjct: 113011 cttccacttgaagagagtgtgtcaaataggactg 112978
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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score =  297 bits (150), Expect = 1e-77
 Identities = 243/274 (88%)
 Strand = Plus / Minus

                                                                         
Query: 122   gaggcctcaattacctccacttgtctcttaattcctttttctcagaccaaatccaagtaa 181
             ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 20440 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 20381

                                                                         
Query: 182   cgaaaagagcagcaaccaatgcgacaatagtaattagaagaagggcataactgaattcat 241
             | | ||  ||||||||||||||  |||| || || || ||||| || || ||||| ||||
Sbjct: 20380 caacaatggcagcaaccaatgcagcaattgtgatgagtagaagcgcgtagctgaactcat 20321

                                                                         
Query: 242   ccgtgagtgaatcataggttcttgacggtgcaagccgagtgtagaagagatcaacgccat 301
             | || ||||| |||||||||||||| || |||||| |||| ||||| ||||| || ||||
Sbjct: 20320 cagttagtgagtcataggttcttgagggagcaagctgagtatagaaaagatctacaccat 20261

                                                                         
Query: 302   atgtgaaaacaagagtagtggactccaactttgcaggaatagaaacaattcctcgcaggg 361
             ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 20260 atgtgaaaacaagagtagttgactccaactttgaaggaatagaaacaattcctcgcagag 20201

                                               
Query: 362   cttccacttgaagagagtgtgtcacataggactg 395
             |||||||||||||||||||||||| |||||||||
Sbjct: 20200 cttccacttgaagagagtgtgtcaaataggactg 20167
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  297 bits (150), Expect = 1e-77
 Identities = 243/274 (88%)
 Strand = Plus / Minus

                                                                           
Query: 122     gaggcctcaattacctccacttgtctcttaattcctttttctcagaccaaatccaagtaa 181
               ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 7835665 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 7835606

                                                                           
Query: 182     cgaaaagagcagcaaccaatgcgacaatagtaattagaagaagggcataactgaattcat 241
               | | ||  ||||||||||||||  |||| || || || ||||| || || ||||| ||||
Sbjct: 7835605 caacaatggcagcaaccaatgcagcaattgtgatgagtagaagcgcgtagctgaactcat 7835546

                                                                           
Query: 242     ccgtgagtgaatcataggttcttgacggtgcaagccgagtgtagaagagatcaacgccat 301
               | || ||||| |||||||||||||| || |||||| |||| ||||| ||||| || ||||
Sbjct: 7835545 cagttagtgagtcataggttcttgagggagcaagctgagtatagaaaagatctacaccat 7835486

                                                                           
Query: 302     atgtgaaaacaagagtagtggactccaactttgcaggaatagaaacaattcctcgcaggg 361
               ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct: 7835485 atgtgaaaacaagagtagttgactccaactttgaaggaatagaaacaattcctcgcagag 7835426

                                                 
Query: 362     cttccacttgaagagagtgtgtcacataggactg 395
               |||||||||||||||||||||||| |||||||||
Sbjct: 7835425 cttccacttgaagagagtgtgtcaaataggactg 7835392
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>gb|BT017487.1| Zea mays clone EL01N0412H03.c mRNA sequence
          Length = 1066

 Score =  256 bits (129), Expect = 5e-65
 Identities = 249/289 (86%)
 Strand = Plus / Minus

                                                                       
Query: 134 acctccacttgtctcttaattcctttttctcagaccaaatccaagtaacgaaaagagcag 193
           |||||||||||||||| || ||||||||||||||||||||||| ||| | | ||  || |
Sbjct: 663 acctccacttgtctctcaactcctttttctcagaccaaatccatgtaccaataatggcgg 604

                                                                       
Query: 194 caaccaatgcgacaatagtaattagaagaagggcataactgaattcatccgtgagtgaat 253
           ||||||   |  | || || |||||||| || ||||| |||||||| || || || ||||
Sbjct: 603 caaccaggactgcgatcgtgattagaagcagcgcatagctgaattcgtcggttagggaat 544

                                                                       
Query: 254 cataggttcttgacggtgcaagccgagtgtagaagagatcaacgccatatgtgaaaacaa 313
           |||||||||||||||| |||||| | |||||||| ||||| || ||||||||||||||||
Sbjct: 543 cataggttcttgacggggcaagctgggtgtagaatagatcgacaccatatgtgaaaacaa 484

                                                                       
Query: 314 gagtagtggactccaactttgcaggaatagaaacaattcctcgcagggcttccacttgaa 373
           |||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| 
Sbjct: 483 gagtagtggactccaactttgcaggaatagaaacaatggctcgcagggcctccacttgat 424

                                                            
Query: 374 gagagtgtgtcacataggactgtggaatgataggcaaataatctgttaa 422
           ||||||| |||||| ||||||| || || ||||||||| ||||||||||
Sbjct: 423 gagagtgcgtcacaaaggactggggtattataggcaaagaatctgttaa 375
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>gb|BT016314.1| Zea mays clone Contig147 mRNA sequence
          Length = 1034

 Score =  192 bits (97), Expect = 6e-46
 Identities = 181/209 (86%)
 Strand = Plus / Minus

                                                                       
Query: 214 attagaagaagggcataactgaattcatccgtgagtgaatcataggttcttgacggtgca 273
           |||||||| ||||| || ||||||||||| ||||| ||||| ||||| |||||||| |||
Sbjct: 539 attagaagcagggcgtagctgaattcatcggtgagggaatcgtaggtccttgacggggca 480

                                                                       
Query: 274 agccgagtgtagaagagatcaacgccatatgtgaaaacaagagtagtggactccaacttt 333
           ||| | |||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||| 
Sbjct: 479 agctgggtgtagaatagatcgacgccgtatgtgaaaacaagagtcgtggactccagcttc 420

                                                                       
Query: 334 gcaggaatagaaacaattcctcgcagggcttccacttgaagagagtgtgtcacataggac 393
           |||||||||||||| || ||||||||||| ||||||||  ||||||| |||||| |||| 
Sbjct: 419 gcaggaatagaaacgatccctcgcagggcctccacttggtgagagtgcgtcacaaaggaa 360

                                        
Query: 394 tgtggaatgataggcaaataatctgttaa 422
           || || || ||||||||| ||||||||||
Sbjct: 359 tgaggtattataggcaaagaatctgttaa 331
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>gb|AY107078.1| Zea mays PCO126628 mRNA sequence
          Length = 1793

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 103/122 (84%), Gaps = 5/122 (4%)
 Strand = Plus / Minus

                                                                        
Query: 301  tatgtgaaaacaagagtagtggactccaactttgcaggaatagaaacaattcctcgcagg 360
            ||||||||||||||||| ||||| ||| | || |||||||||||||| | |||||| | |
Sbjct: 1735 tatgtgaaaacaagagtcgtgga-tcc-agttcgcaggaatagaaacga-tcctcg-aag 1680

                                                                        
Query: 361  gcttccacttgaagagagtgtgtcacataggactgtggaatgataggcaaataatctgtt 420
            || ||||||||  ||||||| |||||| |||| || || || ||||||||| ||||||||
Sbjct: 1679 gcctccacttggtgagagtgcgtcacaaagga-tgaggtattataggcaaagaatctgtt 1621

              
Query: 421  aa 422
            ||
Sbjct: 1620 aa 1619
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>emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, complete sequence
          Length = 27428

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 18    gtttcactttgaaatgttacat 39
             ||||||||||||||||||||||
Sbjct: 25728 gtttcactttgaaatgttacat 25707
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>gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete sequence
          Length = 150117

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 96     aaaatttcatttgcatcacaacatta 121
              ||||||||||||||||||||| ||||
Sbjct: 131011 aaaatttcatttgcatcacaaaatta 130986
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>emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 in linkage group 18,
              complete sequence
          Length = 142119

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 12     aatcaagtttcactttgaaatg 33
              ||||||||||||||||||||||
Sbjct: 106261 aatcaagtttcactttgaaatg 106282
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>emb|BX936456.6| Zebrafish DNA sequence from clone DKEY-266J9 in linkage group 18,
              complete sequence
          Length = 173079

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 12     aatcaagtttcactttgaaatg 33
              ||||||||||||||||||||||
Sbjct: 171580 aatcaagtttcactttgaaatg 171559
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>gb|AC124906.3| Equus caballus clone CH241-268I16, complete sequence
          Length = 202908

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 96     aaaatttcatttgcatcacaacatta 121
              ||||||||||||||||||||| ||||
Sbjct: 115191 aaaatttcatttgcatcacaaaatta 115166
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 96      aaaatttcatttgcatcacaacatta 121
               ||||||||||||||||||||| ||||
Sbjct: 1827450 aaaatttcatttgcatcacaaaatta 1827425
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>gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete sequence
          Length = 166122

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 96    aaaatttcatttgcatcacaacatta 121
             ||||||||||||||||||||| ||||
Sbjct: 53460 aaaatttcatttgcatcacaaaatta 53435
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>gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequence
          Length = 156330

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 96    aaaatttcatttgcatcacaacatta 121
             ||||||||||||||||||||| ||||
Sbjct: 19580 aaaatttcatttgcatcacaaaatta 19555
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>emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in linkage group 18,
           complete sequence
          Length = 212425

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  aatcaagtttcactttgaaatg 33
           ||||||||||||||||||||||
Sbjct: 501 aatcaagtttcactttgaaatg 480
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>gb|AC148202.3| Carollia perspicillata clone 598J23, complete sequence
          Length = 130753

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 96     aaaatttcatttgcatcacaacatta 121
              ||||||||||||||||||||| ||||
Sbjct: 121925 aaaatttcatttgcatcacaaaatta 121900
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 96      aaaatttcatttgcatcacaacatta 121
               ||||||||||||||||||||| ||||
Sbjct: 1505648 aaaatttcatttgcatcacaaaatta 1505623
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 96      aaaatttcatttgcatcacaacatta 121
               ||||||||||||||||||||| ||||
Sbjct: 1281640 aaaatttcatttgcatcacaaaatta 1281615
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
              sequence
          Length = 1178688

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 391    gactgtggaatgataggcaaa 411
              |||||||||||||||||||||
Sbjct: 826293 gactgtggaatgataggcaaa 826313
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>gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-464J4, complete
             sequence
          Length = 185081

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    aaaatttcatttgcatcacaa 116
             |||||||||||||||||||||
Sbjct: 76568 aaaatttcatttgcatcacaa 76548
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>gb|AC184157.2| Pan troglodytes BAC clone CH251-31B9 from chromosome 15, complete
              sequence
          Length = 167965

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 26     ttgaaatgttacataaataatagaa 50
              ||||||||||||||||| |||||||
Sbjct: 136889 ttgaaatgttacataaaaaatagaa 136865
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>gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromosome 15, complete
             sequence
          Length = 177821

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 26    ttgaaatgttacataaataatagaa 50
             ||||||||||||||||| |||||||
Sbjct: 14591 ttgaaatgttacataaaaaatagaa 14615
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>ref|XM_573014.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNI03040) partial mRNA
          Length = 1554

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 391 gactgtggaatgataggcaaa 411
           |||||||||||||||||||||
Sbjct: 54  gactgtggaatgataggcaaa 34
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>ref|NM_031506.1| Rattus norvegicus cystic fibrosis transmembrane conductance regulator
            homolog (Cftr), mRNA
          Length = 6287

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   aaaatttcatttgcatcacaa 116
            |||||||||||||||||||||
Sbjct: 5872 aaaatttcatttgcatcacaa 5852
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>gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 224687

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     aaaatttcatttgcatcacaa 116
              |||||||||||||||||||||
Sbjct: 123697 aaaatttcatttgcatcacaa 123717
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>gb|AC087433.4|AC087433 Homo sapiens chromosome 15 clone RP11-101J17 and RP11-501G11 map 15q21.1,
              complete sequence
          Length = 185145

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 26     ttgaaatgttacataaataatagaa 50
              ||||||||||||||||| |||||||
Sbjct: 113538 ttgaaatgttacataaaaaatagaa 113562
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 96      aaaatttcatttgcatcacaa 116
               |||||||||||||||||||||
Sbjct: 1409740 aaaatttcatttgcatcacaa 1409720
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>gb|AC133184.3| Mus musculus BAC clone RP24-186A17 from chromosome 5, complete sequence
          Length = 169357

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     aagaatcaagtttcactttga 29
             |||||||||||||||||||||
Sbjct: 84875 aagaatcaagtttcactttga 84895
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>emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene
          Length = 5082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   aaaatttcatttgcatcacaa 116
            |||||||||||||||||||||
Sbjct: 1962 aaaatttcatttgcatcacaa 1942
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>emb|AJ307884.1|BJU307884 Brassica juncea pin1 gene, 5'UTR
          Length = 3213

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 15   caagtttcactttgaaatgtt 35
            |||||||||||||||||||||
Sbjct: 1385 caagtttcactttgaaatgtt 1405
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>dbj|AP003471.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1552D7
          Length = 160912

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    tgtctcttaattcctttttct 163
              |||||||||||||||||||||
Sbjct: 127623 tgtctcttaattcctttttct 127603
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>dbj|AP002847.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1742H10
          Length = 155723

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   tgtctcttaattcctttttct 163
             |||||||||||||||||||||
Sbjct: 46779 tgtctcttaattcctttttct 46759
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>emb|AL935147.9| Mouse DNA sequence from clone RP23-33O19 on chromosome 2, complete
              sequence
          Length = 241249

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     ttgaaatgttacataaataat 46
              |||||||||||||||||||||
Sbjct: 132441 ttgaaatgttacataaataat 132461
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>dbj|AP004494.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09I17, TM0026,
             complete sequence
          Length = 103129

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    tcaagtttcactttgaaatgt 34
             |||||||||||||||||||||
Sbjct: 30586 tcaagtttcactttgaaatgt 30566
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>gb|AC162037.2| Mus musculus chromosome 8, clone RP23-35K23, complete sequence
          Length = 241548

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    ttgaagagagtgtgtcacat 388
              ||||||||||||||||||||
Sbjct: 115352 ttgaagagagtgtgtcacat 115371
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>gb|AY768813.1| Trachemys scripta elegans alpha-9 nicotinic acetylcholine receptor
            subunit precursor, mRNA, complete cds
          Length = 1800

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 327  caactttgcaggaatagaaacaat 350
            ||||||| ||||||||||||||||
Sbjct: 1325 caactttccaggaatagaaacaat 1348
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>gb|AC095999.8| Rattus norvegicus 4 BAC CH230-12B2 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 217673

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tttgaaatgttacataaata 44
              ||||||||||||||||||||
Sbjct: 181450 tttgaaatgttacataaata 181469
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>gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromosome 7, complete
              sequence
          Length = 205419

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 19     tttcactttgaaatgttacataaataat 46
              |||| ||||||||||| |||||||||||
Sbjct: 187735 tttccctttgaaatgtcacataaataat 187708
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>gb|AC121847.2| Mus musculus BAC clone RP24-86M13 from 3, complete sequence
          Length = 190165

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    tcacataggactgtggaatg 402
              ||||||||||||||||||||
Sbjct: 141492 tcacataggactgtggaatg 141511
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>gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121242

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    ttgaaatgttacataaataa 45
             ||||||||||||||||||||
Sbjct: 11611 ttgaaatgttacataaataa 11592
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>emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 in linkage group 14,
             complete sequence
          Length = 149672

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   gaaaagagcagcaaccaatg 202
             ||||||||||||||||||||
Sbjct: 32876 gaaaagagcagcaaccaatg 32895
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>emb|CR381570.12| Zebrafish DNA sequence from clone CH211-74M13 in linkage group 10,
             complete sequence
          Length = 151591

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   tttcatttgcatcacaacat 119
             ||||||||||||||||||||
Sbjct: 10212 tttcatttgcatcacaacat 10231
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>gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromosome 7, complete sequence
          Length = 196799

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 19     tttcactttgaaatgttacataaataat 46
              |||| ||||||||||| |||||||||||
Sbjct: 180873 tttccctttgaaatgtcacataaataat 180846
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>emb|BX901876.11| Zebrafish DNA sequence from clone CH211-140G2 in linkage group 18,
              complete sequence
          Length = 155813

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    caggaatagaaacaattcct 354
              ||||||||||||||||||||
Sbjct: 142556 caggaatagaaacaattcct 142537
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>emb|BX927136.11| Zebrafish DNA sequence from clone DKEY-98O11 in linkage group 18,
             complete sequence
          Length = 93818

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   caggaatagaaacaattcct 354
             ||||||||||||||||||||
Sbjct: 71565 caggaatagaaacaattcct 71546
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>gb|AC120162.6| Mus musculus chromosome 8, clone RP24-456M18, complete sequence
          Length = 190755

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    ttgaagagagtgtgtcacat 388
              ||||||||||||||||||||
Sbjct: 159837 ttgaagagagtgtgtcacat 159856
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>emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D10, complete sequence
          Length = 171446

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    aaatgttacataaataatag 48
             ||||||||||||||||||||
Sbjct: 55753 aaatgttacataaataatag 55734
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>gb|AC139316.4| Mus musculus BAC clone RP24-500I24 from 3, complete sequence
          Length = 187000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    tcacataggactgtggaatg 402
              ||||||||||||||||||||
Sbjct: 118772 tcacataggactgtggaatg 118753
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 128     tcaattacctccacttgtct 147
               ||||||||||||||||||||
Sbjct: 1655722 tcaattacctccacttgtct 1655741
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>emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on chromosome 9, complete
             sequence
          Length = 110444

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    aaatgttacataaataatag 48
             ||||||||||||||||||||
Sbjct: 23070 aaatgttacataaataatag 23051


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,278,699
Number of Sequences: 3902068
Number of extensions: 4278699
Number of successful extensions: 107707
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107534
Number of HSP's gapped (non-prelim): 173
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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