ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 262 6e-67
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 4e-06
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.001
4emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 52 0.001
5gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 52 0.001
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
7dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
8ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.062
9ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.25
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
11dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
12dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.25
13dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.25
14gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 44 0.25
15ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.97
16gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.97
17emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.97
18emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.97
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
21dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
22dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
23dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.97
24gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA,... 42 0.97
25gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA,... 42 0.97
26dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2... 42 0.97
27ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.8
28gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 3.8
29gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 3.8 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  262 bits (132), Expect = 6e-67
 Identities = 148/153 (96%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 29   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 89   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 144
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 145  cttaattattcacgcaccggcacaactctctgt 177
            |||||||||||| ||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744



 Score =  182 bits (92), Expect = 4e-43
 Identities = 98/100 (98%)
 Strand = Plus / Minus

                                                                        
Query: 194  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 253
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                    
Query: 254  gtgctcagatcagatggatatgctgttcgggatgcccctg 293
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctg 2628
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 22   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 71
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 104  ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 148
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000



 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 263 tcagatggatatgctgttcgggatgcccctg 293
           ||||||||| |||||||| ||||||||||||
Sbjct: 906 tcagatggagatgctgttggggatgcccctg 876
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 260      agatcagatggatatgctgttcgggatgcccctg 293
                |||||||||||| |||||||| ||||||||||||
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctg 30026419
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 260  agatcagatggatatgctgttcgggatgcccctg 293
            |||||||||||| |||||||| ||||||||||||
Sbjct: 2698 agatcagatggagatgctgttggggatgcccctg 2665
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 260   agatcagatggatatgctgttcgggatgcccctg 293
             |||||||||||| |||||||| ||||||||||||
Sbjct: 81299 agatcagatggagatgctgttggggatgcccctg 81332
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 260      agatcagatggatatgctgttcgggatgcccctg 293
                |||||||||||| |||||||| ||||||||||||
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctg 30117841
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 260  agatcagatggatatgctgttcgggatgcccctg 293
            |||||||||||| |||||||| ||||||||||||
Sbjct: 2731 agatcagatggagatgctgttggggatgcccctg 2698
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 263  tcagatggatatgctgttcgggatgcccctg 293
            ||||||||| |||||||| ||||||||||||
Sbjct: 2613 tcagatggagatgctgttggggatgcccctg 2583
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>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 263  tcagatggatatgctgttcgggatgcccct 292
            ||||||||| |||||||| |||||||||||
Sbjct: 2881 tcagatggagatgctgtttgggatgcccct 2852
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 263     tcagatggatatgctgttcgggatgcccct 292
               ||||||||| |||||||| |||||||||||
Sbjct: 5276963 tcagatggagatgctgtttgggatgcccct 5276992
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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 263  tcagatggatatgctgttcgggatgcccct 292
            ||||||||| |||||||| |||||||||||
Sbjct: 3266 tcagatggagatgctgtttgggatgcccct 3295
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>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 263  tcagatggatatgctgttcgggatgcccct 292
            ||||||||| |||||||| |||||||||||
Sbjct: 2880 tcagatggagatgctgtttgggatgcccct 2851
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>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 263  tcagatggatatgctgttcgggatgcccct 292
            ||||||||| |||||||| |||||||||||
Sbjct: 2042 tcagatggagatgctgtttgggatgcccct 2013
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>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 261  gatcagatggatatgctgttcgggatgccc 290
            ||||||||||| |||||||| |||||||||
Sbjct: 1558 gatcagatggagatgctgttggggatgccc 1529
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>ref|XM_483279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3198

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 262  atcagatggatatgctgttcgggatgccc 290
            ||||||||||| ||||||| |||||||||
Sbjct: 2978 atcagatggatgtgctgttggggatgccc 2950
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 136    ccttattgccttaattattca 156
              |||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattca 136213



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   ccttattgccttaattattca 156
             |||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattca 94234
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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    aaacaagggattttttctgca 63
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    gcaaaacaagggattttttct 60
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 262      atcagatggatatgctgttcgggatgccc 290
                ||||||||||| ||||||| |||||||||
Sbjct: 25242576 atcagatggatgtgctgttggggatgccc 25242548



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 262      atcagatggatatgctgttcgggatgccc 290
                ||||||||||| ||||||| |||||||||
Sbjct: 25209453 atcagatggatgtgctgttggggatgccc 25209481
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 136      ccttattgccttaattattca 156
                |||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattca 21745037



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 136      ccttattgccttaattattca 156
                |||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattca 21703058
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>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 262    atcagatggatatgctgttcgggatgccc 290
              ||||||||||| ||||||| |||||||||
Sbjct: 107699 atcagatggatgtgctgttggggatgccc 107671



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 262   atcagatggatatgctgttcgggatgccc 290
             ||||||||||| ||||||| |||||||||
Sbjct: 74576 atcagatggatgtgctgttggggatgccc 74604
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>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 262   atcagatggatatgctgttcgggatgccc 290
             ||||||||||| ||||||| |||||||||
Sbjct: 17761 atcagatggatgtgctgttggggatgccc 17733
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>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full
            insert sequence
          Length = 3196

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 262  atcagatggatatgctgttcgggatgccc 290
            ||||||||||| ||||||| |||||||||
Sbjct: 2976 atcagatggatgtgctgttggggatgccc 2948
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>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds
          Length = 2232

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 262  atcagatggatatgctgttcgggatgccc 290
            ||||||||||| ||||||| |||||||||
Sbjct: 2053 atcagatggatgtgctgttggggatgccc 2025
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>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds
          Length = 2664

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 262  atcagatggatatgctgttcgggatgccc 290
            ||||||||||| ||||||| |||||||||
Sbjct: 2461 atcagatggatgtgctgttggggatgccc 2433
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>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for
            lipoxygenase, complete cds
          Length = 3007

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 262  atcagatggatatgctgttcgggatgccc 290
            ||||||||||| ||||||| |||||||||
Sbjct: 2891 atcagatggatgtgctgttggggatgccc 2863
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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    ggagggaacatcacaccatc 25
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438
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>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 261 gatcagatggatatgctgttcgggatgcccct 292
           ||||||||||| |||||| | |||||||||||
Sbjct: 132 gatcagatggagatgctgctggggatgcccct 163
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>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 261  gatcagatggatatgctgttcgggatgcccct 292
            ||||||||||| |||||| | |||||||||||
Sbjct: 1216 gatcagatggagatgctgctggggatgcccct 1185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,723,587
Number of Sequences: 3902068
Number of extensions: 1723587
Number of successful extensions: 30925
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30827
Number of HSP's gapped (non-prelim): 97
length of query: 293
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 271
effective length of database: 17,147,199,772
effective search space: 4646891138212
effective search space used: 4646891138212
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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