Clone Name | rbastl45b08 |
---|---|
Clone Library Name | barley_pub |
>VL1_HPV18 (P06794) Major capsid protein L1| Length = 568 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +2 Query: 107 DVEKEEKIFLDSDKYQQGRAKSAQGRVYSNP*FTPNKNVATFSSVGSPP 253 +V+ +EK LD D+Y GR Q + P P K A ++ S P Sbjct: 510 NVDLKEKFSLDLDQYPLGRKFLVQAGLRRKPTIGPRKRSAPSATTSSKP 558
>HXC6_XENLA (P02832) Homeobox protein Hox-C6 (XlHbox-1) (AC1) [Contains:| Homeobox protein Hox-C6 PRII; Homeobox protein Hox-C6 PRI] Length = 234 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 164 AKSAQGRVYSNP*FTPNKNVATFSSVG 244 A AQ R+YS+P +TP NV SS G Sbjct: 42 AAVAQNRIYSSPFYTPQDNVVFGSSRG 68
>GSTP1_XENLA (Q8JFZ2) Glutathione S-transferase P 1 (EC 2.5.1.18) (XlGSTP1-1)| (GST class-pi) Length = 212 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 77 VQIPQWYHEADVEKEEKIFLDSDKYQQG 160 VQIP W+ D K+E +F ++Q G Sbjct: 34 VQIPDWFSGKDARKKEAVFGQLPQFQDG 61
>PDC2_ORYSA (P51848) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| Length = 603 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 Query: 21 CLFNSIVWLFNKGNYFISMYKSHNGTMKLM*KKKRKYSWTATSISRGE 164 C NSI++L N G Y I + + H+G ++ K Y+ +I GE Sbjct: 496 CAQNSIIFLINNGGYTIEV-EIHDGPYNVI--KNWNYTGLVDAIHNGE 540
>HXC6_NOTVI (P14858) Homeobox protein Hox-C6 (NvHox-1) (FH-2)| Length = 234 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 173 AQGRVYSNP*FTPNKNVATFSSVGSPPKFHS 265 AQ R+YS+P ++P NV FSS P ++ S Sbjct: 45 AQNRIYSSPFYSPQDNV-VFSSGRGPYEYGS 74
>HEMA_IADIR (P11132) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 566 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +3 Query: 27 FNSIVWLFNKGNYFISMYKSHNGTMK 104 F ++VWL K N + ++ +S+N T K Sbjct: 160 FRNVVWLIKKDNAYPTIKRSYNNTNK 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,451,883 Number of Sequences: 219361 Number of extensions: 1012535 Number of successful extensions: 2441 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2439 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)