ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPCK_RHOPA (Q9ZNH4) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 30 1.1
2YJK8_YEAST (P42946) Hypothetical 41.5 kDa protein in GZF3-IME2 i... 30 1.4
3PDCD1_HUMAN (Q15116) Programmed cell death protein 1 precursor (... 28 5.4
4PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-) 28 5.4
5ULA1_SCHPO (Q9UT93) NEDD8-activating enzyme E1 regulatory subuni... 28 7.0
6NRAM4_ARATH (Q9FN18) Metal transporter Nramp4 (AtNramp4) 27 9.1
7SO1B1_HUMAN (Q9Y6L6) Solute carrier organic anion transporter fa... 27 9.1
8G6PD_TREPA (O83491) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.... 27 9.1
9YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homo... 27 9.1

>PPCK_RHOPA (Q9ZNH4) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 537

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 335 RDQYAKVEGLVPERCRNDFPKFRKHPEQKGTPEDNI 228
           R + A++E  VPE    D P FR  P++ G   +N+
Sbjct: 143 RPERAELENFVPELTLIDLPSFRADPKRHGCRSENV 178



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>YJK8_YEAST (P42946) Hypothetical 41.5 kDa protein in GZF3-IME2 intergenic|
           region
          Length = 383

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = +1

Query: 7   ILPSYDMLNGQCDQICTQLVQNISQQWYKILTVSFVICKITLGSNSYFLILTYSTCKFNF 186
           ILP Y +L G  +     LV    + +Y I+   F+   ITLGS  +  +   +T + + 
Sbjct: 155 ILPGYIILCGALELQSRSLVAGAVRMFYAIIYSLFLGFGITLGSALFGWMYHNATNEISC 214

Query: 187 PRLIR-------IICFRLSFSILS 237
           P+LI        +  F +S S+L+
Sbjct: 215 PQLISPWFRFLFVPAFTISISLLN 238



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>PDCD1_HUMAN (Q15116) Programmed cell death protein 1 precursor (Protein PD-1)|
           (hPD-1) (CD279 antigen)
          Length = 288

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 23  TCSMDNATK-FVLNWYKILVNNGT 91
           TCS  N ++ FVLNWY++  +N T
Sbjct: 53  TCSFSNTSESFVLNWYRMSPSNQT 76



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>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)|
          Length = 671

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -3

Query: 326 YAKVEGLVPERCRNDFPKFRKHPEQKGTPEDNIEKESLKHMI 201
           + K+E L P++ +  F +F  + + K + + N+E + +KH++
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLL 224



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>ULA1_SCHPO (Q9UT93) NEDD8-activating enzyme E1 regulatory subunit|
           (Ubiquitin-like activation protein 1)
           (Ubiquitin-activating enzyme E1-like 1)
          Length = 500

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 338 SRDQYAKVEGLVPERCRNDFPKFRKHPEQ 252
           S  QY K++ +  E+  ND  KF+K+ +Q
Sbjct: 322 STQQYVKLQVIYKEKSENDILKFKKYVQQ 350



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>NRAM4_ARATH (Q9FN18) Metal transporter Nramp4 (AtNramp4)|
          Length = 512

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/46 (19%), Positives = 25/46 (54%)
 Frame = +1

Query: 94  ILTVSFVICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSI 231
           + T+S+++  + +  N Y ++  +S    N   L+ +I F +++ +
Sbjct: 437 VQTISWIVAALVIAINGYLMVDFFSGAATNLILLVPVIIFAIAYVV 482



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>SO1B1_HUMAN (Q9Y6L6) Solute carrier organic anion transporter family member 1B1|
           (Solute carrier family 21 member 6) (Sodium-independent
           organic anion-transporting polypeptide 2) (OATP 2)
           (Liver-specific organic anion transporter 1) (LST-1)
           (OATP-C)
          Length = 691

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 103 VSFVICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSSGVP-FCSGCFLNLG 279
           V F+     +G+    + ++Y   K + P+LI I CF +    + + +P F  G +    
Sbjct: 66  VGFIDGSFEIGNLLVIVFVSYFGSKLHRPKLIGIGCFIMGIGGVLTALPHFFMGYYRYSK 125

Query: 280 KSFLQRSGTSPSTLA 324
           ++ +  S  S STL+
Sbjct: 126 ETNINSSENSTSTLS 140



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>G6PD_TREPA (O83491) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)|
          Length = 515

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 113 SSAKLHWEVTATF*Y*RTQPVSSIF-HA*SGSYVSGSLSQYCLPGFLSARGVS*T*GSHS 289
           SS++L  E+   F   R      +  H     YV+G +    +PG+L   GV     + +
Sbjct: 269 SSSRLRDEIVKVFDCLRPMGERDVMQHTVRAQYVAGKIRGVAVPGYLEESGVDPRSCTET 328

Query: 290 YSALVQVLQPW 322
           ++AL   +  W
Sbjct: 329 FAALKCYIDNW 339



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>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 307

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 112 VICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSS 240
           V C +  GS+ Y++ L +S+C   F      I   L   ILSS
Sbjct: 229 VFCGLLFGSDGYYVALAWSSCALMF-----FIVRSLKMKILSS 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,745,960
Number of Sequences: 219361
Number of extensions: 995423
Number of successful extensions: 2433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2433
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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