Clone Name | rbastl45b07 |
---|---|
Clone Library Name | barley_pub |
>PPCK_RHOPA (Q9ZNH4) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 537 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 335 RDQYAKVEGLVPERCRNDFPKFRKHPEQKGTPEDNI 228 R + A++E VPE D P FR P++ G +N+ Sbjct: 143 RPERAELENFVPELTLIDLPSFRADPKRHGCRSENV 178
>YJK8_YEAST (P42946) Hypothetical 41.5 kDa protein in GZF3-IME2 intergenic| region Length = 383 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%) Frame = +1 Query: 7 ILPSYDMLNGQCDQICTQLVQNISQQWYKILTVSFVICKITLGSNSYFLILTYSTCKFNF 186 ILP Y +L G + LV + +Y I+ F+ ITLGS + + +T + + Sbjct: 155 ILPGYIILCGALELQSRSLVAGAVRMFYAIIYSLFLGFGITLGSALFGWMYHNATNEISC 214 Query: 187 PRLIR-------IICFRLSFSILS 237 P+LI + F +S S+L+ Sbjct: 215 PQLISPWFRFLFVPAFTISISLLN 238
>PDCD1_HUMAN (Q15116) Programmed cell death protein 1 precursor (Protein PD-1)| (hPD-1) (CD279 antigen) Length = 288 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +2 Query: 23 TCSMDNATK-FVLNWYKILVNNGT 91 TCS N ++ FVLNWY++ +N T Sbjct: 53 TCSFSNTSESFVLNWYRMSPSNQT 76
>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)| Length = 671 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/42 (26%), Positives = 26/42 (61%) Frame = -3 Query: 326 YAKVEGLVPERCRNDFPKFRKHPEQKGTPEDNIEKESLKHMI 201 + K+E L P++ + F +F + + K + + N+E + +KH++ Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLL 224
>ULA1_SCHPO (Q9UT93) NEDD8-activating enzyme E1 regulatory subunit| (Ubiquitin-like activation protein 1) (Ubiquitin-activating enzyme E1-like 1) Length = 500 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -3 Query: 338 SRDQYAKVEGLVPERCRNDFPKFRKHPEQ 252 S QY K++ + E+ ND KF+K+ +Q Sbjct: 322 STQQYVKLQVIYKEKSENDILKFKKYVQQ 350
>NRAM4_ARATH (Q9FN18) Metal transporter Nramp4 (AtNramp4)| Length = 512 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/46 (19%), Positives = 25/46 (54%) Frame = +1 Query: 94 ILTVSFVICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSI 231 + T+S+++ + + N Y ++ +S N L+ +I F +++ + Sbjct: 437 VQTISWIVAALVIAINGYLMVDFFSGAATNLILLVPVIIFAIAYVV 482
>SO1B1_HUMAN (Q9Y6L6) Solute carrier organic anion transporter family member 1B1| (Solute carrier family 21 member 6) (Sodium-independent organic anion-transporting polypeptide 2) (OATP 2) (Liver-specific organic anion transporter 1) (LST-1) (OATP-C) Length = 691 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = +1 Query: 103 VSFVICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSSGVP-FCSGCFLNLG 279 V F+ +G+ + ++Y K + P+LI I CF + + + +P F G + Sbjct: 66 VGFIDGSFEIGNLLVIVFVSYFGSKLHRPKLIGIGCFIMGIGGVLTALPHFFMGYYRYSK 125 Query: 280 KSFLQRSGTSPSTLA 324 ++ + S S STL+ Sbjct: 126 ETNINSSENSTSTLS 140
>G6PD_TREPA (O83491) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)| Length = 515 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +2 Query: 113 SSAKLHWEVTATF*Y*RTQPVSSIF-HA*SGSYVSGSLSQYCLPGFLSARGVS*T*GSHS 289 SS++L E+ F R + H YV+G + +PG+L GV + + Sbjct: 269 SSSRLRDEIVKVFDCLRPMGERDVMQHTVRAQYVAGKIRGVAVPGYLEESGVDPRSCTET 328 Query: 290 YSALVQVLQPW 322 ++AL + W Sbjct: 329 FAALKCYIDNW 339
>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)| Length = 307 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +1 Query: 112 VICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSS 240 V C + GS+ Y++ L +S+C F I L ILSS Sbjct: 229 VFCGLLFGSDGYYVALAWSSCALMF-----FIVRSLKMKILSS 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,745,960 Number of Sequences: 219361 Number of extensions: 995423 Number of successful extensions: 2433 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2433 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)