Clone Name | rbastl45b07 |
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Clone Library Name | barley_pub |
>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence Length = 1585 Score = 125 bits (63), Expect = 1e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 279 gaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacgact 338 |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| | | Sbjct: 1327 gaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcaccagt 1268 Query: 339 gtaacaacagaaactccaacaataagaggtaaaactggggctggggt 385 | ||| |||||||||||||||||||| || |||||||| |||||||| Sbjct: 1267 gcaaccacagaaactccaacaataagcggaaaaactggtgctggggt 1221
>gb|AY105873.1| Zea mays PCO094136 mRNA sequence Length = 809 Score = 125 bits (63), Expect = 1e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 279 gaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacgact 338 |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| | | Sbjct: 513 gaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcaccagt 454 Query: 339 gtaacaacagaaactccaacaataagaggtaaaactggggctggggt 385 | ||| |||||||||||||||||||| || |||||||| |||||||| Sbjct: 453 gcaaccacagaaactccaacaataagcggaaaaactggtgctggggt 407
>ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3582 Score = 65.9 bits (33), Expect = 9e-08 Identities = 93/113 (82%) Strand = Plus / Minus Query: 270 gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 329 |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| ||| Sbjct: 3524 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 3465 Query: 330 atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctgg 382 || || | || || || |||||||| ||||||||||| || || |||||||| Sbjct: 3464 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctgg 3412
>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full insert sequence Length = 1629 Score = 65.9 bits (33), Expect = 9e-08 Identities = 93/113 (82%) Strand = Plus / Minus Query: 270 gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 329 |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| ||| Sbjct: 1183 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 1124 Query: 330 atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctgg 382 || || | || || || |||||||| ||||||||||| || || |||||||| Sbjct: 1123 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctgg 1071
>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence Length = 187416 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 taacaacagaaactccaacaa 360 ||||||||||||||||||||| Sbjct: 153736 taacaacagaaactccaacaa 153756
>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence Length = 105004 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 69 aaatattagtcaacaatggtacaaa 93 |||||||||||||||||| |||||| Sbjct: 101295 aaatattagtcaacaatgttacaaa 101319
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 270 gaacttagggaagtcattcctacagcgctctggtacaagtc 310 |||| ||||| ||||||||| ||||| || ||||||||||| Sbjct: 11023970 gaacctagggtagtcattcccacagcactttggtacaagtc 11024010 Score = 40.1 bits (20), Expect = 5.1 Identities = 56/68 (82%) Strand = Plus / Plus Query: 315 aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 374 ||||||||||| ||||| || | || || || |||||||| ||||||||||| || || Sbjct: 11024109 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 11024168 Query: 375 ggggctgg 382 |||||||| Sbjct: 11024169 ggggctgg 11024176
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 270 gaacttagggaagtcattcctacagcgctctggtacaagtc 310 |||| ||||| ||||||||| ||||| || ||||||||||| Sbjct: 52852 gaacctagggtagtcattcccacagcactttggtacaagtc 52892 Score = 40.1 bits (20), Expect = 5.1 Identities = 56/68 (82%) Strand = Plus / Plus Query: 315 aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 374 ||||||||||| ||||| || | || || || |||||||| ||||||||||| || || Sbjct: 52991 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 53050 Query: 375 ggggctgg 382 |||||||| Sbjct: 53051 ggggctgg 53058
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 270 gaacttagggaagtcattcctacagcgctctggtacaagtc 310 |||| ||||| ||||||||| ||||| || ||||||||||| Sbjct: 126812 gaacctagggtagtcattcccacagcactttggtacaagtc 126852 Score = 40.1 bits (20), Expect = 5.1 Identities = 56/68 (82%) Strand = Plus / Plus Query: 315 aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 374 ||||||||||| ||||| || | || || || |||||||| ||||||||||| || || Sbjct: 126951 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 127010 Query: 375 ggggctgg 382 |||||||| Sbjct: 127011 ggggctgg 127018
>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence Length = 200505 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 taacaacagaaactccaacaa 360 ||||||||||||||||||||| Sbjct: 170731 taacaacagaaactccaacaa 170711
>ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-containing protein (DDB0220518), partial mRNA Length = 9210 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 actgtaacaacagaaactccaaca 359 ||||||||||||| |||||||||| Sbjct: 8839 actgtaacaacagtaactccaaca 8862
>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence Length = 162238 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ctttctcaatattgtcttcc 240 |||||||||||||||||||| Sbjct: 12002 ctttctcaatattgtcttcc 11983
>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence Length = 203478 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ctttctcaatattgtcttcc 240 |||||||||||||||||||| Sbjct: 195772 ctttctcaatattgtcttcc 195753
>emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in linkage group 18, complete sequence Length = 164758 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 tgtttcaggctctctttctc 227 |||||||||||||||||||| Sbjct: 128434 tgtttcaggctctctttctc 128415
>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence Length = 68440 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tatgtttcaggctctctttc 225 |||||||||||||||||||| Sbjct: 64829 tatgtttcaggctctctttc 64810
>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence Length = 204294 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tacaaaatattagtcaacaa 84 |||||||||||||||||||| Sbjct: 131842 tacaaaatattagtcaacaa 131823
>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence Length = 198167 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tatgtttcaggctctctttc 225 |||||||||||||||||||| Sbjct: 2684 tatgtttcaggctctctttc 2665
>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18, complete sequence Length = 145250 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 tgtttcaggctctctttctc 227 |||||||||||||||||||| Sbjct: 91226 tgtttcaggctctctttctc 91207
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaaatattagtcaacaat 85 |||||||||||||||||||| Sbjct: 2555987 acaaaatattagtcaacaat 2555968
>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete sequence Length = 172826 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aaatattagtcaacaatggt 88 |||||||||||||||||||| Sbjct: 59691 aaatattagtcaacaatggt 59710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,633,376 Number of Sequences: 3902068 Number of extensions: 3633376 Number of successful extensions: 60385 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60316 Number of HSP's gapped (non-prelim): 67 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)