ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RS27A_HORVU (P22277) 40S ribosomal protein S27a 100 9e-22
2RS27A_MAIZE (P27923) 40S ribosomal protein S27a 96 3e-20
3RS27A_ORYSA (P51431) 40S ribosomal protein S27a 92 3e-19
4RS27A_SOLTU (P62981) 40S ribosomal protein S27a 92 4e-19
5RS27A_LYCES (P62980) 40S ribosomal protein S27a 92 4e-19
6R27AC_ARATH (P59233) 40S ribosomal protein S27a-3 87 1e-17
7R27AB_ARATH (P59232) 40S ribosomal protein S27a-2 87 1e-17
8RS27A_LUPAL (P47905) 40S ribosomal protein S27a 86 2e-17
9RS27A_ASPOF (P31753) 40S ribosomal protein S27a 86 2e-17
10R27AA_ARATH (P59271) 40S ribosomal protein S27a-1 77 1e-14
11RS27A_CHICK (P79781) 40S ribosomal protein S27a 76 2e-14
12RS27A_HUMAN (P62979) 40S ribosomal protein S27a 76 2e-14
13RS27A_CAVPO (P62978) 40S ribosomal protein S27a 76 2e-14
14RS27A_BOVIN (P62992) 40S ribosomal protein S27a 76 2e-14
15RS27A_RAT (P62982) 40S ribosomal protein S27a 74 7e-14
16RS27A_MOUSE (P62983) 40S ribosomal protein S27a 74 7e-14
17RS27A_ICTPU (P68200) 40S ribosomal protein S27a 74 1e-13
18RS27A_DAUCA (P59272) 40S ribosomal protein S27a (Fragment) 71 6e-13
19RS27A_DROME (P15357) 40S ribosomal protein S27a 69 2e-12
20RS27A_NEUCR (P14799) 40S ribosomal protein S27a (CRP6) (S37) 64 9e-11
21RS37_YEAST (P05759) 40S ribosomal protein S37 (CEP76) (YS24) 62 5e-10
22RS27A_CAEEL (P37165) 40S ribosomal protein S27a 59 3e-09
23RS27A_CAEBR (P37164) 40S ribosomal protein S27a 59 3e-09
24RS27A_SCHPO (P0C016) 40S ribosomal protein S27a 57 9e-09
25RS27A_KLULA (P69061) 40S ribosomal protein S27a 57 9e-09
26RS27A_PLUXY (P68202) 40S ribosomal protein S27a 57 1e-08
27RS27A_SPOFR (P68203) 40S ribosomal protein S27a 56 2e-08
28RS27A_MANSE (P29504) 40S ribosomal protein S27a 56 2e-08
29RS27A_DICDI (P14797) 40S ribosomal protein S27a 55 4e-08
30RS27A_PYRKO (Q5JIY9) 30S ribosomal protein S27ae 48 7e-06
31RS27A_METMP (Q6M029) 30S ribosomal protein S27ae 47 9e-06
32RS27A_METJA (P54031) 30S ribosomal protein S27ae 47 1e-05
33RS27A_PYRHO (P61239) 30S ribosomal protein S27ae 47 2e-05
34RS27A_PYRFU (Q8U443) 30S ribosomal protein S27ae 47 2e-05
35RS27A_PYRAB (P61238) 30S ribosomal protein S27ae 45 3e-05
36RS27A_THEAC (Q9HJ78) 30S ribosomal protein S27ae 44 1e-04
37RS27A_NANEQ (P61240) 30S ribosomal protein S27ae 44 1e-04
38RS27A_ARCFU (O29152) 30S ribosomal protein S27ae 44 1e-04
39RS27A_METKA (Q8TVD7) 30S ribosomal protein S27ae 43 2e-04
40RS27A_THEVO (Q97BH4) 30S ribosomal protein S27ae 43 2e-04
41RS27A_PICTO (Q6L0P7) 30S ribosomal protein S27ae 43 2e-04
42RS27A_METMA (Q8PZ94) 30S ribosomal protein S27ae 43 2e-04
43RS27A_METAC (Q8TJT1) 30S ribosomal protein S27ae 43 2e-04
44RS27A_METTH (O26368) 30S ribosomal protein S27ae 39 0.002
45RS27A_HALMA (Q06125) 30S ribosomal protein S27ae (HSH) 34 0.080
46RS27A_HALSA (Q9HNL5) 30S ribosomal protein S27ae 32 0.30
47RS27A_SULSO (Q97ZY7) 30S ribosomal protein S27ae 29 2.6
48RS27A_AERPE (P61297) 30S ribosomal protein S27ae 29 2.6
49RS27A_SULTO (Q975Q8) 30S ribosomal protein S27ae 29 3.3
50ZN646_HUMAN (O15015) Zinc finger protein 646 28 5.7
51RS27A_SULAC (Q4JAG0) 30S ribosomal protein S27ae 28 7.4
52NADB_PYRHO (O57765) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Q... 28 7.4 
>RS27A_HORVU (P22277) 40S ribosomal protein S27a|
          Length = 79

 Score =  100 bits (249), Expect = 9e-22
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 199
           GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA
Sbjct: 37  GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
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>RS27A_MAIZE (P27923) 40S ribosomal protein S27a|
          Length = 79

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 40/43 (93%), Positives = 41/43 (95%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 199
           GKVTRLRKECPN +CGAG FMANHFDRHYCGKCGLTYVYNQKA
Sbjct: 37  GKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79
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>RS27A_ORYSA (P51431) 40S ribosomal protein S27a|
          Length = 79

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 40/43 (93%), Positives = 40/43 (93%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 199
           GKVTRLRKECPN DCGAGTFMANHFDRHYC KC LTYVYNQKA
Sbjct: 37  GKVTRLRKECPNHDCGAGTFMANHFDRHYCRKCRLTYVYNQKA 79
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>RS27A_SOLTU (P62981) 40S ribosomal protein S27a|
          Length = 80

 Score = 91.7 bits (226), Expect = 4e-19
 Identities = 38/41 (92%), Positives = 40/41 (97%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GKV RLRKECPNA+CGAGTFMANHFDRHYCGKCGLTYVYN+
Sbjct: 36  GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNK 76
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>RS27A_LYCES (P62980) 40S ribosomal protein S27a|
          Length = 80

 Score = 91.7 bits (226), Expect = 4e-19
 Identities = 38/41 (92%), Positives = 40/41 (97%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GKV RLRKECPNA+CGAGTFMANHFDRHYCGKCGLTYVYN+
Sbjct: 36  GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNK 76
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>R27AC_ARATH (P59233) 40S ribosomal protein S27a-3|
          Length = 81

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQK 202
           GKV RLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY ++
Sbjct: 36  GKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
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>R27AB_ARATH (P59232) 40S ribosomal protein S27a-2|
          Length = 81

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQK 202
           GKV RLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY ++
Sbjct: 36  GKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
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>RS27A_LUPAL (P47905) 40S ribosomal protein S27a|
          Length = 79

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 38/43 (88%), Positives = 39/43 (90%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 199
           GKV RLRKECPN +CGAGTFMANHFDRHYCGKCG TYVY QKA
Sbjct: 36  GKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVY-QKA 77
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>RS27A_ASPOF (P31753) 40S ribosomal protein S27a|
          Length = 78

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GKV RLRKECPNA+CGAGTFMANH DRHYCGKCGLTYVY +
Sbjct: 36  GKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76
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>R27AA_ARATH (P59271) 40S ribosomal protein S27a-1|
          Length = 80

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GKV RL+KECP+  CG GTFMA+HFDRHYCGKCG TYV+ +
Sbjct: 36  GKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKK 76
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>RS27A_CHICK (P79781) 40S ribosomal protein S27a|
          Length = 80

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK++RLR+ECP+ +CGAG FMA+HFDRHYCGKC LTY +N+
Sbjct: 36  GKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76
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>RS27A_HUMAN (P62979) 40S ribosomal protein S27a|
          Length = 80

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK++RLR+ECP+ +CGAG FMA+HFDRHYCGKC LTY +N+
Sbjct: 36  GKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
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>RS27A_CAVPO (P62978) 40S ribosomal protein S27a|
          Length = 80

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK++RLR+ECP+ +CGAG FMA+HFDRHYCGKC LTY +N+
Sbjct: 36  GKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
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>RS27A_BOVIN (P62992) 40S ribosomal protein S27a|
          Length = 80

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 29/41 (70%), Positives = 37/41 (90%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK++RLR+ECP+ +CGAG FMA+HFDRHYCGKC LTY +N+
Sbjct: 36  GKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
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>RS27A_RAT (P62982) 40S ribosomal protein S27a|
          Length = 80

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK++RLR+ECP+ +CGAG FM +HFDRHYCGKC LTY +N+
Sbjct: 36  GKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76
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>RS27A_MOUSE (P62983) 40S ribosomal protein S27a|
          Length = 80

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK++RLR+ECP+ +CGAG FM +HFDRHYCGKC LTY +N+
Sbjct: 36  GKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76
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>RS27A_ICTPU (P68200) 40S ribosomal protein S27a|
          Length = 80

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 29/41 (70%), Positives = 35/41 (85%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK+ RLR+ECP  +CGAG FMA+HFDRHYCGKC LTY +N+
Sbjct: 36  GKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76
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>RS27A_DAUCA (P59272) 40S ribosomal protein S27a (Fragment)|
          Length = 67

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 29/32 (90%), Positives = 30/32 (93%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGK 232
           GKV RLRKECPN +CGAGTFMANHFDRHYCGK
Sbjct: 36  GKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67
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>RS27A_DROME (P15357) 40S ribosomal protein S27a|
          Length = 80

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GK+ RLR+ECP  +CGAG FMA H DRHYCGKC LT+V+++
Sbjct: 36  GKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76
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>RS27A_NEUCR (P14799) 40S ribosomal protein S27a (CRP6) (S37)|
          Length = 78

 Score = 63.9 bits (154), Expect = 9e-11
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 199
           GK+ RLR+ECPN  CGAG FMA   DR YCG+C LTYV+ + +
Sbjct: 36  GKIDRLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKSS 78
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>RS37_YEAST (P05759) 40S ribosomal protein S37 (CEP76) (YS24)|
          Length = 76

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 26/40 (65%), Positives = 29/40 (72%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYN 208
           GKVT+LR+EC N  CGAG F+ANH DR YCGKC   Y  N
Sbjct: 36  GKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVN 75
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>RS27A_CAEEL (P37165) 40S ribosomal protein S27a|
          Length = 93

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYV 214
           GK+TRLRKEC    CG G FMA H +RHYCG+C  T V
Sbjct: 36  GKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLV 73
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>RS27A_CAEBR (P37164) 40S ribosomal protein S27a|
          Length = 93

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYV 214
           GK+TRLRKEC    CG G FMA H +RHYCG+C  T V
Sbjct: 36  GKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLV 73
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>RS27A_SCHPO (P0C016) 40S ribosomal protein S27a|
          Length = 74

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           G V RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct: 36  GSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69
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>RS27A_KLULA (P69061) 40S ribosomal protein S27a|
          Length = 74

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTY 217
           GKV +LRKECPN  CG G F+ANH DR YCGKC  T+
Sbjct: 36  GKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTF 70
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>RS27A_PLUXY (P68202) 40S ribosomal protein S27a|
          Length = 79

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 24/39 (61%), Positives = 28/39 (71%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVY 211
           GK+ RLR+EC +  CGAG FMA   DRHYCGKC  T V+
Sbjct: 36  GKIHRLRRECTSEQCGAGVFMAVMEDRHYCGKCHRTMVF 74
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>RS27A_SPOFR (P68203) 40S ribosomal protein S27a|
          Length = 80

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 24/39 (61%), Positives = 27/39 (69%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVY 211
           GK+ RLR+EC    CGAG FMA   DRHYCGKC  T V+
Sbjct: 36  GKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF 74
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>RS27A_MANSE (P29504) 40S ribosomal protein S27a|
          Length = 79

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 24/39 (61%), Positives = 27/39 (69%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVY 211
           GK+ RLR+EC    CGAG FMA   DRHYCGKC  T V+
Sbjct: 36  GKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVF 74
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>RS27A_DICDI (P14797) 40S ribosomal protein S27a|
          Length = 78

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQK 202
           GK+ R+ +ECP   CGAG FMA H +R YCGKC  T V   K
Sbjct: 37  GKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLVKKSK 78
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>RS27A_PYRKO (Q5JIY9) 30S ribosomal protein S27ae|
          Length = 57

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 22/36 (61%), Positives = 23/36 (63%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           GKV R  K CP   CG G FMANH DR  CG+CG T
Sbjct: 20  GKVVRKNKFCPR--CGPGVFMANHKDRWSCGRCGYT 53
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>RS27A_METMP (Q6M029) 30S ribosomal protein S27ae|
          Length = 67

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 23/41 (56%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -3

Query: 321 VTRLRKECPNADCGAGTFMANHFDRHYCGKCG-LTYVYNQK 202
           V RL+K CP   CGAG FMA H +R  CGKCG + Y  N+K
Sbjct: 24  VERLKKVCPK--CGAGVFMAEHLNRFACGKCGYMEYKKNEK 62
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>RS27A_METJA (P54031) 30S ribosomal protein S27ae|
          Length = 60

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = -3

Query: 324 KVTRLRKECPNADCGAGTFMANHFDRHYCGKCG 226
           KV RL+K CP   CG G FMA H +R+ CGKCG
Sbjct: 19  KVIRLKKTCPR--CGPGVFMAEHLNRYACGKCG 49
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>RS27A_PYRHO (P61239) 30S ribosomal protein S27ae|
          Length = 50

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/36 (61%), Positives = 23/36 (63%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           GKV R  K CP   CG G FMA+H DR  CGKCG T
Sbjct: 13  GKVIRKNKFCPR--CGPGVFMADHGDRWACGKCGYT 46
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>RS27A_PYRFU (Q8U443) 30S ribosomal protein S27ae|
          Length = 50

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/36 (61%), Positives = 23/36 (63%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           GKV R  K CP   CG G FMA+H DR  CGKCG T
Sbjct: 13  GKVIRKNKFCPR--CGPGVFMADHGDRWACGKCGYT 46
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>RS27A_PYRAB (P61238) 30S ribosomal protein S27ae|
          Length = 50

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           GKV R  K CP   CG G FMA+H DR  CG+CG T
Sbjct: 13  GKVIRKNKFCPR--CGPGVFMADHGDRWACGRCGYT 46
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>RS27A_THEAC (Q9HJ78) 30S ribosomal protein S27ae|
          Length = 55

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           GK+ R  + CP   CG G F+A H DR+ CG+CG T
Sbjct: 12  GKLVRKHRFCPR--CGPGVFLAEHADRYSCGRCGYT 45
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>RS27A_NANEQ (P61240) 30S ribosomal protein S27ae|
          Length = 61

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           GK+ R +K CP      G+FMA H DR++CGKCG T
Sbjct: 13  GKLIRKKKVCPRC----GSFMAEHKDRYHCGKCGYT 44
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>RS27A_ARCFU (O29152) 30S ribosomal protein S27ae|
          Length = 55

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = -3

Query: 324 KVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           KV R +K CP   CG G F+A H DR  CGKCG T
Sbjct: 18  KVVRKKKFCPR--CGEGVFLAEHKDRLSCGKCGYT 50
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>RS27A_METKA (Q8TVD7) 30S ribosomal protein S27ae|
          Length = 60

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQ 205
           GKV R    CP   CG G FMA+H +R+ CG+CG T   +Q
Sbjct: 15  GKVERKNPFCPR--CGPGVFMADHGNRYACGRCGYTEFKDQ 53
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>RS27A_THEVO (Q97BH4) 30S ribosomal protein S27ae|
          Length = 55

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           GK+ R  + CP   CG G F+A H DR  CG+CG T
Sbjct: 12  GKLVRKHRFCPR--CGPGVFLAEHADRFTCGRCGYT 45
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>RS27A_PICTO (Q6L0P7) 30S ribosomal protein S27ae|
          Length = 51

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -3

Query: 324 KVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           K+ R R+ CP   CG G F+A H DR  CG+CG T
Sbjct: 13  KIVRKRRFCPR--CGPGVFLAEHEDRFSCGRCGYT 45
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>RS27A_METMA (Q8PZ94) 30S ribosomal protein S27ae|
          Length = 49

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = -3

Query: 321 VTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           VTRL++ CP   CG G F+A+H +R  CGKCG T
Sbjct: 14  VTRLKQFCPR--CGPGVFLADHKNRLACGKCGYT 45
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>RS27A_METAC (Q8TJT1) 30S ribosomal protein S27ae|
          Length = 49

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = -3

Query: 321 VTRLRKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           VTRL++ CP   CG G F+A+H +R  CGKCG T
Sbjct: 14  VTRLKQFCPR--CGPGVFLADHKNRLACGKCGYT 45
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>RS27A_METTH (O26368) 30S ribosomal protein S27ae|
          Length = 51

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQK 202
           GK+ R    C    C  G FMA+H DR+ CGKCG T   N++
Sbjct: 12  GKLVRKNPFCVR--CSNGVFMADHGDRYACGKCGYTEWKNRE 51
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>RS27A_HALMA (Q06125) 30S ribosomal protein S27ae (HSH)|
          Length = 43

 Score = 34.3 bits (77), Expect = 0.080
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 309 RKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           R+ CP   CG  T +A H DR +CGKCG T
Sbjct: 14  RETCPR--CG-DTVLAEHEDRQHCGKCGYT 40
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>RS27A_HALSA (Q9HNL5) 30S ribosomal protein S27ae|
          Length = 44

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 309 RKECPNADCGAGTFMANHFDRHYCGKCGLT 220
           ++ CP   CG  TF+A H DR  CG+CG T
Sbjct: 15  KEMCPR--CG-DTFLAAHDDRQVCGRCGYT 41
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>RS27A_SULSO (Q97ZY7) 30S ribosomal protein S27ae|
          Length = 75

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 324 KVTRLRKECPNADCGAGTFMANHF---DRHYCGKCGLT 220
           KV    K+CP      G+ MA+H    +R  CGKCG T
Sbjct: 33  KVKLKNKKCPRC----GSIMAHHLKPNERWSCGKCGYT 66
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>RS27A_AERPE (P61297) 30S ribosomal protein S27ae|
          Length = 63

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 327 GKVTRLRKECPNADCGAGTFMANHF---DRHYCGKCGLTYVYNQK 202
           G +    + CP      G+ MA+H    +R +CGKCG T    +K
Sbjct: 22  GVIKLKNRRCPRC----GSIMAHHMKPVERWHCGKCGYTEFVTKK 62
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>RS27A_SULTO (Q975Q8) 30S ribosomal protein S27ae|
          Length = 66

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 324 KVTRLRKECPNADCGAGTFMANHF---DRHYCGKCGLT 220
           K+    K+CP      G+ MA+H    +R  CGKCG T
Sbjct: 26  KIKLKNKKCPRC----GSIMAHHMKPVERWACGKCGYT 59
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>ZN646_HUMAN (O15015) Zinc finger protein 646|
          Length = 1829

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
 Frame = -3

Query: 327  GKVTRLRKECPNADC-------GAGTFMANHFDRHY-CGKCGLTY 217
            GK  RLRK+  +          G GT  A   DR + CG+CG TY
Sbjct: 1264 GKAFRLRKQLASHQRVHMERRGGGGTRKATREDRPFRCGQCGRTY 1308
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>RS27A_SULAC (Q4JAG0) 30S ribosomal protein S27ae|
          Length = 67

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -3

Query: 306 KECPNADCGAGTFMANHF---DRHYCGKCGLT 220
           K+CP      G+ MA+H    +R  CGKCG T
Sbjct: 33  KKCPRC----GSIMAHHMKPLERWACGKCGYT 60
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>NADB_PYRHO (O57765) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate|
           synthetase B)
          Length = 464

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 33  HQNLSTHRITGVGDEIFRKHNTPR-FQLKRQTG 128
           H  L++H +T  G+E+   H+ PR F +K +TG
Sbjct: 89  HDFLTSHGVTFTGNELEGGHSYPRIFTIKSETG 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,265,288
Number of Sequences: 219361
Number of extensions: 587774
Number of successful extensions: 1210
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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