ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMB1_CHICK (Q01635) Laminin beta-1 chain (Laminin beta-1-1 chai... 32 0.53
2LAMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 ... 30 2.0
3LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 ... 30 2.0
4SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (... 28 4.5
5GLB1_PHESE (P11740) Extracellular globin 1 (Globin I) (Erythrocr... 28 4.5
6CDC14_CAEEL (P81299) Probable tyrosine-protein phosphatase cdc-1... 28 5.8
7SCNA_DROME (P35500) Sodium channel protein para (Protein paralytic) 28 7.6
8CHL1_ARATH (Q05085) Nitrate/chlorate transporter 27 10.0
9PIGE_DROME (Q24118) Protein pigeon (Protein linotte) 27 10.0
10SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (... 27 10.0
11DAMX_SERMA (P45459) Protein damX (Fragment) 27 10.0

>LAMB1_CHICK (Q01635) Laminin beta-1 chain (Laminin beta-1-1 chain) (Fragment)|
          Length = 303

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = -1

Query: 99  NPSGLMCPVNL*----LPWRANEGNNNNPAGHCSCRG 1
           N  GL C   L     LPWR  EG N+N    C+C G
Sbjct: 235 NTKGLNCEQCLDFYHDLPWRPAEGRNSNACKKCNCNG 271



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>LAMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 chain)|
          Length = 1786

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -1

Query: 99  NPSGLMCPVNL*----LPWRANEGNNNNPAGHCSC 7
           N  GL C + +     LPWR  EG N+N    C+C
Sbjct: 303 NTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 337



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>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)|
          Length = 1786

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -1

Query: 99  NPSGLMCPVNL*----LPWRANEGNNNNPAGHCSC 7
           N  GL C + +     LPWR  EG N+N    C+C
Sbjct: 303 NTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 337



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>SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (SPL1-related|
           protein 3)
          Length = 988

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 191 SRQLQLTTPQKHSLPFITTSSRLYSTPHSNP 283
           S QL  ++P++ S P + +S++ YS+  SNP
Sbjct: 351 SLQLFTSSPEEESRPKVASSTKYYSSASSNP 381



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>GLB1_PHESE (P11740) Extracellular globin 1 (Globin I) (Erythrocruorin)|
          Length = 141

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 41  PSFALHGNHRFTGHINPLGLQIESDRFTAGLKHLRNDNT 157
           P F  HG     G  + +G+  E D FT  L HL+  +T
Sbjct: 57  PEFQAHGIRVLAGLDSVIGVLDEDDTFTVQLAHLKAQHT 95



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>CDC14_CAEEL (P81299) Probable tyrosine-protein phosphatase cdc-14 (EC 3.1.3.48)|
           (Cell division cycle-related protein 14)
          Length = 1063

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 182 LNRSRQLQLTTPQKHSLPFITTSSRLYSTPHSN 280
           LNR+R+  + TP K+     T+S +L +TP+ N
Sbjct: 490 LNRNREPIIVTPSKNGTSSGTSSRQLKTTPNGN 522



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>SCNA_DROME (P35500) Sodium channel protein para (Protein paralytic)|
          Length = 2131

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 258 KRLDVVIKGKLCFCGVVSCSCLLRFKTTQWNSFYVLSLRRCFKPAVNLSLSIC 100
           K L+V++KG   FC V  C C +  K  +W S  V      F P V L +++C
Sbjct: 783 KALEVILKGIDVFC-VWDC-CWVWLKFQEWVSLIV------FDPFVELFITLC 827



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>CHL1_ARATH (Q05085) Nitrate/chlorate transporter|
          Length = 590

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 188 GLRPPSGIPSMYCHCEDVSSLQ 123
           GLRPP   P+   HCE  S +Q
Sbjct: 124 GLRPPRCNPTTSSHCEQASGIQ 145



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>PIGE_DROME (Q24118) Protein pigeon (Protein linotte)|
          Length = 915

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +2

Query: 32  LLLPSFALHGNHR------FTGHINPLGLQIESDRFTAGLKHLRN 148
           LL P+FALHG H       F  H+  +GLQ E +       H R+
Sbjct: 351 LLRPTFALHGQHHLLVSSAFFVHLLDVGLQHEPNCHIVCAAHNRS 395



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>SPL14_ARATH (Q8RY95) Squamosa promoter-binding-like protein 14 (SPL1-related|
           protein 2)
          Length = 1035

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 191 SRQLQLTTPQKHSLPFITTSSRLYSTPHSNP 283
           S QL  ++P+  S P + +S + YS+  SNP
Sbjct: 389 SLQLFTSSPEDESRPTVASSRKYYSSASSNP 419



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>DAMX_SERMA (P45459) Protein damX (Fragment)|
          Length = 214

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 191 SRQLQLTTPQKHSLPFITTSSRLYSTPHSNP 283
           +R +Q T PQ+H  P  T +++  +T H +P
Sbjct: 69  TRPVQGTAPQQHKTPAKTAAAKPTATQHKSP 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,166,693
Number of Sequences: 219361
Number of extensions: 842039
Number of successful extensions: 1817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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