ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Can... 42 1.0
2emb|BX932790.1| Gallus gallus finished cDNA, clone ChEST276e2 40 4.1
3gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, co... 40 4.1

>gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92909

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   agaaagaggcagcaaagttat 308
             |||||||||||||||||||||
Sbjct: 59901 agaaagaggcagcaaagttat 59881



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>emb|BX932790.1| Gallus gallus finished cDNA, clone ChEST276e2
          Length = 1125

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  actacaactaacaacaccacagaa 222
            |||||||||||||| |||||||||
Sbjct: 1041 actacaactaacaagaccacagaa 1018



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>gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, complete sequence
          Length = 138532

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   ctgcaggcttgaaacatctt 142
             ||||||||||||||||||||
Sbjct: 45496 ctgcaggcttgaaacatctt 45515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,520,689
Number of Sequences: 3902068
Number of extensions: 2520689
Number of successful extensions: 40973
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40970
Number of HSP's gapped (non-prelim): 3
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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