ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) ... 28 5.9
2Y4650_STRCO (P41108) Putative lipoprotein SCO4650 precursor 28 5.9
3YNV5_CAEEL (P34568) Hypothetical protein T16H12.5 28 7.8

>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
            chain)
          Length = 1798

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 127  CPAQLVNWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAG 252
            C     N   G G Q  + H + RAR P C      CH RAG
Sbjct: 1079 CAPNFWNLTSGHGCQPCACHPS-RARGPTCNEFTGQCHCRAG 1119



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>Y4650_STRCO (P41108) Putative lipoprotein SCO4650 precursor|
          Length = 285

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 158 GAACRISHLMVQVALAPRCVTVCRGPVMGEPAGRS 262
           G   R + + V V+ A  CVT C GP   + AG S
Sbjct: 3   GTTARRTVVSVAVSAALACVTACTGPGGSDDAGHS 37



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>YNV5_CAEEL (P34568) Hypothetical protein T16H12.5|
          Length = 451

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 136 QLVNWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAGGPFP*SASPWEPLI 294
           +LV+  VG G  +  S G+G +            HGR+  P P SAS  +PL+
Sbjct: 39  RLVSMEVGMGNDEVVSSGSGNS-----------AHGRSISPSPSSASHGDPLL 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,058,353
Number of Sequences: 219361
Number of extensions: 999033
Number of successful extensions: 2300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2300
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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