ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl45a10 |
|---|---|
| Clone Library Name | barley_pub |
>DDX18_MOUSE (Q8K363) ATP-dependent RNA helicase DDX18 (EC 3.6.1.-) (DEAD box| protein 18) Length = 660 Score = 30.8 bits (68), Expect = 0.81 Identities = 18/77 (23%), Positives = 36/77 (46%) Frame = -3 Query: 252 GCFGKLLAGSLQSLVFSARARSLVCFESRKLTELSGCVITYSVPVLSVEACCKCGGGDIL 73 G F SL +LV +++ +++TE+ I + + A K G G L Sbjct: 162 GAFEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTL 221 Query: 72 LFVVPIIRVNIEIRVFP 22 F++P+I + ++++ P Sbjct: 222 AFLIPVIELIVKLKFMP 238
>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) Length = 2350 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +2 Query: 59 GTTNSRISPPPHLQQASTDKTGTLYVITHPLNS 157 GT + ++P PHL ST +T + THPL S Sbjct: 571 GTHHPALTPGPHLLAGSTSQTPLPTINTHPLTS 603
>LYAM2_PIG (P98110) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 484 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = -2 Query: 301 MPSCENPFCSSLLDPIGLLRKAFSGLSSEPCI*CTCTFAC 182 +PSC+ CSSL P R+ S EP CTFAC Sbjct: 358 VPSCQVVQCSSLEVP----REINMSCSGEPVFGAVCTFAC 393
>SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250)| Length = 2214 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Frame = +2 Query: 20 FGKTRISIFTLMIGTTNSRISPPPHLQQASTDKTG----TLYVITHPLNSVSFLDSKQTS 187 FGK +S TL ++ PP T++TG LY+ + P++ D+K T Sbjct: 477 FGKPAVSTVTLEHQKELENVAQPPQAPHQPTERTGRSEMVLYIQSEPVSQ----DAKPTG 532 Query: 188 ERARALNTRL*REPAKSFPKQPNRIQ 265 A R R + S P ++Q Sbjct: 533 HNREASKKRKVRTRSLSDFTGPPQLQ 558
>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) (Thyroid receptor-interacting protein 8) (TRIP-8) Length = 2540 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 59 GTTNSRISPPPHLQQASTDKTGTLYVITHPLNS 157 GT + ++P PHL S+ +T + THPL S Sbjct: 752 GTHHPALTPAPHLLAGSSSQTPLPTINTHPLTS 784
>LYAM2_HORSE (Q95LG1) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 610 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -2 Query: 301 MPSCENPFCSSLLDPIGLLRKAFSGLSSEPCI*CTCTFAC 182 +PSC+ C+SL P K S EP CTFAC Sbjct: 484 VPSCQVVQCASLAVP----GKVSMSCSGEPVFGAVCTFAC 519
>DBP4_YEAST (P20448) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-) (DEAD box| protein 4) (Helicase CA4) (Helicase UF1) Length = 770 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -3 Query: 165 KLTELSGCVITYSVPVLSVEACCKCGGGDILLFVVPII 52 KLTE+ I S+ V A K G G L F+VP+I Sbjct: 63 KLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100
>SUBT_BACS9 (P28842) Subtilisin precursor (EC 3.4.21.62)| Length = 420 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = +1 Query: 4 RILIDIWKNTNLNIYSYDWYNKQQDITASTFTTGFNRQDRNTIRYNTSTQLCKLPGLE 177 R+L+D NL + Y D FTT N + N ++ N + + K+P LE Sbjct: 40 RVLVDSVDQKNLK-NAKQQYGVHWDFAGEGFTTDMNEKQFNALKKNKNLTVEKVPELE 96
>POT15_HUMAN (Q6S5H4) Prostate, ovary, testis expressed protein on chromosome 15| Length = 581 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 222 ESPLKAFRSNPIGSSKDEQKGFSQDGIDENLTPQNEGRR 338 E +K SNP+G ++ G S D+ L PQ + R+ Sbjct: 416 EEEIKKHGSNPVGLPENLTNGASAGNGDDGLIPQRKSRK 454
>OPHN1_MOUSE (Q99J31) Oligophrenin 1| Length = 802 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 228 PLKAFRSNPIGSSKDEQKGFSQDG 299 PL+ FR IG +K+ +K F +DG Sbjct: 115 PLETFRKEQIGFTKERKKKFEKDG 138
>Y1738_HAEIN (P44302) Hypothetical protein HI1738| Length = 244 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%) Frame = -3 Query: 285 TLFVHLYWIRLGC-----FGKLLAGSLQSLVFSARARSLVCF 175 +L++H+YW+ LG FG +L +L+ + FS A LV F Sbjct: 145 SLYLHIYWV-LGAAMGNLFGTVLPFNLKGVEFSMTALFLVIF 185
>ANR21_HUMAN (Q86YR6) Ankyrin repeat domain-containing protein 21 (Protein POTE)| (Prostate, ovary, testis expressed protein) Length = 584 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +3 Query: 222 ESPLKAFRSNPIGSSKDEQKGFSQDGIDENLTPQNEGRR 338 E +K SNP+G ++ G S D+ L PQ R+ Sbjct: 416 EEEIKKHGSNPVGLPENLTNGASAGNGDDGLIPQRRSRK 454
>CD97_MOUSE (Q9Z0M6) CD97 antigen precursor| Length = 818 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = -3 Query: 303 RCRLVKTLFVHLYWIRLGCFGKLLAGSLQSLVFSARARSLVCFESRKLTELSGCVITYSV 124 RCRLV + +H ++ C+ L L LV F+ + L+ C+I Y V Sbjct: 593 RCRLV-AMMLHFCFLAAFCWMALEGVELYFLVVRV-------FQGQGLSTWQRCLIGYGV 644 Query: 123 PVLSV 109 P+L V Sbjct: 645 PLLIV 649
>POLG_STEVM (P09732) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 1525 Score = 27.3 bits (59), Expect = 9.0 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Frame = -3 Query: 288 KTLFVHLYWIRLGCFGKLLAGSLQSLVFSARARSLVCFESRKLTELSGCVITYSVPVLSV 109 +TLF + WI G G LL + AR RS+ S L + G +I + V + Sbjct: 739 RTLFGGMSWITQGLLGALLLW----MGLQARDRSI----SLTLLAVGGILIFLATSVQAD 790 Query: 108 EACC--------KCGGG 82 C KCGGG Sbjct: 791 SGCAISLQRRELKCGGG 807
>OPHN1_PONPY (Q7YQL5) Oligophrenin 1| Length = 802 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 228 PLKAFRSNPIGSSKDEQKGFSQDG 299 PL+ FR IG +K+ +K F +DG Sbjct: 115 PLENFRKEQIGFTKERKKKFEKDG 138
>OPHN1_PANTR (Q7YQL6) Oligophrenin 1| Length = 802 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 228 PLKAFRSNPIGSSKDEQKGFSQDG 299 PL+ FR IG +K+ +K F +DG Sbjct: 115 PLENFRKEQIGFTKERKKKFEKDG 138
>OPHN1_HUMAN (O60890) Oligophrenin 1| Length = 802 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 228 PLKAFRSNPIGSSKDEQKGFSQDG 299 PL+ FR IG +K+ +K F +DG Sbjct: 115 PLENFRKEQIGFTKERKKKFEKDG 138
>RINT1_DROME (Q9VS46) RINT1-like protein (DmRINT-1)| Length = 724 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 364 PVSIALWVNLLPSFCGVKFSSMPSCENPFCSSLLDP 257 P+ + W++L FC K + E PF L+DP Sbjct: 386 PMYLLRWISLEERFCAEKMDDILQAETPF--QLIDP 419 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,350,946 Number of Sequences: 219361 Number of extensions: 1141019 Number of successful extensions: 3151 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3070 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3151 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
