ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) ... 51 6e-07
2COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) ... 51 8e-07
3COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) ... 40 0.002
4TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorti... 33 0.14
5SYFM_DROME (O16129) Probable phenylalanyl-tRNA synthetase, mitoc... 33 0.18
6BSN_RAT (O88778) Bassoon protein 32 0.52
7SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130 (... 31 0.68
8CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor 30 1.2
9CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 1.2
10SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sem... 30 1.5
11CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor 30 2.0
12SP96_DICDI (P14328) Spore coat protein SP96 30 2.0
13ACH10_CHICK (Q9I8C7) Neuronal acetylcholine receptor protein, al... 29 2.6
14CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 ... 29 2.6
15CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor 29 2.6
16ZN710_MOUSE (Q3U288) Zinc finger protein 710 29 3.4
17TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorti... 29 3.4
18NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 p... 29 3.4
19Y215_ADE02 (P03291) Hypothetical protein F-215 28 4.4
20ZN710_HUMAN (Q8N1W2) Zinc finger protein 710 28 4.4
21PI2R_MOUSE (P43252) Prostacyclin receptor (Prostanoid IP recepto... 28 4.4
22EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen) 28 4.4
23BSN_MOUSE (O88737) Bassoon protein 28 4.4
24ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related home... 28 4.4
25RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.... 28 4.4
26VE7_BPV5 (Q8BDG6) Protein E7 28 4.4
27CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21 28 5.7
28BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein) 28 7.5
29MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-... 28 7.5
30CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14) 28 7.5
31SEM4D_HUMAN (Q92854) Semaphorin-4D precursor (Leukocyte activati... 28 7.5
32NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3... 28 7.5
33H5_CAIMO (P06513) Histone H5 28 7.5
34OVO_DROME (P51521) Protein ovo (Protein shaven baby) 27 9.8
35DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrol... 27 9.8
36IL2RG_MOUSE (P34902) Cytokine receptor common gamma chain precur... 27 9.8
37PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associ... 27 9.8

>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = -1

Query: 324  VCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 154
            +C A++ PIYRG+    CP   + + P  +GQ+C +  ++ +G D  GL  SP Q R
Sbjct: 1168 ICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPLQFR 1224



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>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = -1

Query: 324  VCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 154
            +C A++ PIYRG+    CP   + + P  +GQ+C +  ++ +G D  GL  SP Q R
Sbjct: 1168 ICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224



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>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -1

Query: 324  VCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGL 178
            +C AT+ PIY     VS P   S++V + + ++  I  +S +GA ASGL
Sbjct: 1149 ICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPASGL 1197



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>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1287

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
 Frame = -2

Query: 293 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNRDKISGD 138
           AGR   P P +  GSCP +R+     A +R  GR        TP+A ++P   R    G+
Sbjct: 522 AGRCLLPRPKSLAGSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGE 581



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>SYFM_DROME (O16129) Probable phenylalanyl-tRNA synthetase, mitochondrial|
           precursor (EC 6.1.1.20) (Phenylalanine--tRNA ligase)
           (PheRS)
          Length = 453

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 302 RSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASS 174
           +ST    +S AP   P S PQ  VS + YA+  W+  TP+  S
Sbjct: 15  KSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILS 57



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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
 Frame = -2

Query: 314  QPLSRSTAGRRTSPA------PTARPGSCP------QSRVSCAAYASSRWSGRTPQASSA 171
            QP +RSTA   + PA      PT  PG  P      +   S    A +   GR PQA SA
Sbjct: 3817 QPTTRSTAPAASHPAGKPQPGPTTAPGPQPAGLPRAEQAGSSKPAAKAPQQGRAPQAQSA 3876

Query: 170  P 168
            P
Sbjct: 3877 P 3877



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>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130|
           (Serine-arginine-rich splicing regulatory protein 130)
           (SRrp130) (SR-rich protein) (SR-related protein)
          Length = 805

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -2

Query: 314 QPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAP 168
           Q  SRS +    SP+  +R  S   S VS ++Y+SS  S RT   SS+P
Sbjct: 505 QGRSRSGSSSSGSPSSNSRTSST-SSTVSSSSYSSSSGSSRTSSRSSSP 552



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>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 317 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 204
           G P +   AGR   P P   PG C P + +  +AYAS+R
Sbjct: 641 GSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASAR 679



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>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 985

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTSPAPTAR-PGSCPQSRVSCAAYASSRWSGRTPQASSAPL 165
           S+A +  SR+T  R+T PAP ++ P   P      A   +SR S  +  A   PL
Sbjct: 4   SAARRASSRATPARKTPPAPASQTPAPSPGGTAGTALGPTSRRSSGSAAAKDQPL 58



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>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 287 RRTSPAPTARPGSCPQSRVSCAAYASS 207
           R   P PT RPG+C  S    A Y SS
Sbjct: 357 RYNGPVPTPRPGACIDSEARAANYTSS 383



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>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 320 AGQPLSRSTAGRRTSPAPTARPG 252
           AG+P  R   G R SP PT RPG
Sbjct: 595 AGEPGPRGLLGPRGSPGPTGRPG 617



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>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSA 171
           SSA      S+A   +SP+ +A   S P S  S ++  SS  S  +  +SSA
Sbjct: 480 SSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSA 531



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSA 171
           SS+    S S++   +SP+ +A   S P S  S ++  SS  S  +  +SSA
Sbjct: 470 SSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSA 521



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>ACH10_CHICK (Q9I8C7) Neuronal acetylcholine receptor protein, alpha-10 subunit|
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 10) (NACHR alpha 10) (Alpha 10 nAChR)
          Length = 452

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 323 SAGQPLSRSTAGR--RTSPAPTARPGSCPQSRVSCAAYA 213
           S G+P    T G   R  P     PG CP+SR  C  +A
Sbjct: 358 SCGRPQREGTGGMGPRDPPGEGVEPGLCPRSRCLCHHHA 396



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>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -2

Query: 305  SRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPLHNRDKISGDDD 132
            SRS++   +S    +R GS   S  SC++ +SS  S  +  +SS+   + +  S +++
Sbjct: 2145 SRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEE 2202



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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 317 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 204
           G P +   AGR   P P   PG C P + +  +AY S+R
Sbjct: 640 GSPGAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSAR 678



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>ZN710_MOUSE (Q3U288) Zinc finger protein 710|
          Length = 666

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
 Frame = -1

Query: 324 VCGATFVPIYR---------GQKDVSCPYCASRFVPSVEGQLC-------SICELSVVGA 193
           VCG +F  +Y          G K   CPYC+S+F  +++G L         + ++S+   
Sbjct: 553 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF--NLKGNLSRHMKVKHGVMDISLDSQ 610

Query: 192 DASGLLCSPTQSR*D 148
           D    L  P  S  D
Sbjct: 611 DPMMELAGPDPSELD 625



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>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1305

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -2

Query: 293 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNRDK 150
           AGR   P P +  GS P +R+     A +R  GR        TP+  ++P+  R +
Sbjct: 546 AGRCLLPRPKSLAGSSPSTRLLTLEEAQARTQGRLGTPTEPTTPKTPASPVERRKR 601



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>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1237

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -2

Query: 326  SSAGQPLSRSTAGRRTSPAPTARPGSC-----PQSRVSCAAYASSRWSGR 192
            S  G P    T   R +P P ARP +C       SR SC   + +RW  R
Sbjct: 951  SGWGPPGGGRTPLARRAPQPPARPATCGPPLPDVSRPSCRHASDARWPVR 1000



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>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTSPAPTAR-PGSCPQSRVSCAAYASSR 204
           S  G    RSTA    SPA +AR   SCP++  +C    S R
Sbjct: 95  SRRGARFRRSTAASSRSPATSARSTSSCPRAAPTCPCPLSRR 136



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>ZN710_HUMAN (Q8N1W2) Zinc finger protein 710|
          Length = 664

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
 Frame = -1

Query: 324 VCGATFVPIYR---------GQKDVSCPYCASRF 250
           VCG +F  +Y          G K   CPYC+S+F
Sbjct: 551 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF 584



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>PI2R_MOUSE (P43252) Prostacyclin receptor (Prostanoid IP receptor) (PGI|
           receptor) (Prostaglandin I2 receptor)
          Length = 415

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -2

Query: 311 PLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPLHNRDKIS 144
           PLSR  +GRR  PAPT+      Q++       SS  +G+    ++ PL   D  S
Sbjct: 349 PLSRPASGRRDPPAPTSL-----QAKEGSWVPLSSWGTGQVAPLTAVPLTGGDGCS 399



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>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)|
          Length = 5065

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 166  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 285
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 4612 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4651



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 166  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 285
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 4078 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4117



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 166  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 285
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 3544 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3583



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 166  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 285
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 3010 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3049



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 166  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 285
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 2476 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 2515



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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
 Frame = -2

Query: 314  QPLSRSTAGRRTSPA------PTARPGSCP-------QSRVSCAAYASSRWSGRTPQASS 174
            QP +R TA   + PA      PT  PG  P       Q+  S    A +   GR PQA +
Sbjct: 3818 QPTTRGTAPAASQPAGKPQPGPTTAPGPQPAGPPRAEQASSSKPPAAKAPQQGRAPQAQT 3877

Query: 173  AP 168
             P
Sbjct: 3878 TP 3879



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>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTS----PAPTARPGSCPQ---SRVSCAAYASSRWSGRTPQASSAP 168
           ++A    + +TAG R      P PTARPG  P    +  + AA A++ W   T + S AP
Sbjct: 108 AAAAAAAATATAGPRGEAPPPPPPTARPGERPDGAGAAAAAAAAAAAAWD--TLKISQAP 165



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>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1156

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 321 CGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELS 205
           CG TF       K  +CPYC S F+ S E  + ++ +LS
Sbjct: 661 CGKTFTI-----KSNTCPYCGSVFISSSEKVVSALRKLS 694



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>VE7_BPV5 (Q8BDG6) Protein E7|
          Length = 124

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 321 CGATFVPIYRGQKDVSCPYCASR 253
           C + F  + RG  D+ CP+CASR
Sbjct: 98  CISQFEQLLRGPLDLLCPHCASR 120



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>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWS 198
           S +  PLS S + R  SP+ +  P  C  SR    A+   R S
Sbjct: 289 SRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPAHRPRRHS 331



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>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 323 SAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASS 207
           SA  PL    A   ++P+PT  PGS P   V   + A S
Sbjct: 560 SASPPLPLPLARPPSTPSPTLNPGSPPGRSVDSCSQAQS 598



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>MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding|
           protein MBD1)
          Length = 636

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -1

Query: 321 CGATFVPIYRGQ---KDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 154
           C A  +   R Q   K V C  CA+  V    G +CS C L +    ASGL C   + R
Sbjct: 175 CRAQRIAFNREQRMFKRVGCGDCAACLVKEDCG-VCSTCRLQLPSDVASGLYCKCERRR 232



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>CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14)|
          Length = 542

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRR-----TSPAPTARPGSCP--------QSRVSCAA---YA---SSR 204
           SSA +  +++TA        T+P  T+ PGSCP        Q++ +C A   YA     +
Sbjct: 324 SSATKTTTKTTATSTKTTTTTAPTATSTPGSCPVANQPCSTQNQYACTADGKYAVCDHGK 383

Query: 203 WSGRTPQASSAPLHNRDKISGDDDYCGFTS 114
           W   +  +++  +   D   G   YCG+ +
Sbjct: 384 WVASSCPSNTVCIPTTD---GASIYCGYAT 410



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>SEM4D_HUMAN (Q92854) Semaphorin-4D precursor (Leukocyte activation antigen|
           CD100) (BB18) (A8) (GR3)
          Length = 862

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 287 RRTSPAPTARPGSCPQSRVSCAAYASS 207
           R   P P  RPG+C  S    A Y SS
Sbjct: 357 RYNGPVPKPRPGACIDSEARAANYTSS 383



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>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1239

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = -2

Query: 284  RTSPAPTARPGSC---PQ---SRVSCAAYASSRWSGRTPQASS 174
            R +P P ARP +C   PQ   SR SC     +RW  R     S
Sbjct: 965  RRAPQPPARPATCAGSPQPDVSRASCRHAWDARWPVRVGHQGS 1007



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>H5_CAIMO (P06513) Histone H5|
          Length = 193

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTSPAPTARP--GSCPQSRVSCAAYASSRWSGRTPQASSAP 168
           S AG+   +  A R TSP   ARP     P  +   AA  + + S  +P+ +  P
Sbjct: 105 SPAGRKKKKKAARRSTSPRKAARPRKARSPAKKPKAAARKARKKSRASPKKAKKP 159



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>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 311 PLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPL 165
           PLS S +G   SP PT++P   PQ +         +  G+ P +   PL
Sbjct: 38  PLSPSGSGSGPSPTPTSQPPPEPQGQ-------GQQVLGQVPDSDQQPL 79



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>DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrolase,|
           mitochondrial precursor (EC 3.6.1.23) (dUTPase) (dUTP
           pyrophosphatase)
          Length = 252

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -2

Query: 314 QPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAP 168
           +P  R  A +   P P +  G   Q     +   ++ W G  P+A  +P
Sbjct: 41  RPAPRPPAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSP 89



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>IL2RG_MOUSE (P34902) Cytokine receptor common gamma chain precursor (Gamma-C)|
           (Interleukin-2 receptor gamma chain) (IL-2R gamma chain)
           (p64) (CD132 antigen)
          Length = 369

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = -2

Query: 326 SSAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAA----YASSRW-SGRTPQASSAPLH 162
           SSA + +        T+P   + P + P   V C      Y +  W S   PQA++  LH
Sbjct: 30  SSANEDIKADLILTSTAPEHLSAP-TLPLPEVQCFVFNIEYMNCTWNSSSEPQATNLTLH 88

Query: 161 NRDKISGDDDY 129
            R K+S ++ +
Sbjct: 89  YRYKVSDNNTF 99



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>PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 275 PAPTARPGSCPQSRVSC--AAYASSRWSGRTPQASSAPLHNR 156
           P P+ +PGS P S VS   A   SS     +PQ S +P+  R
Sbjct: 456 PQPSPQPGSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTAR 497


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,664,630
Number of Sequences: 219361
Number of extensions: 759828
Number of successful extensions: 3121
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 2918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3115
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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