ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSPG_ERWCH (P31585) General secretion pathway protein G precurso... 31 0.93
2DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like p... 30 1.6
3DJLA_MANSM (Q65RA1) DnaJ-like protein djlA 30 2.1
4EDEM2_HUMAN (Q9BV94) ER degradation-enhancing alpha-mannosidase-... 28 4.6
5DUS4_MOUSE (Q8BFV3) Dual specificity protein phosphatase 4 (EC 3... 28 4.6
6GH34_ORYSA (Q60EJ6) Probable indole-3-acetic acid-amido syntheta... 28 6.0
7DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like p... 28 7.9

>GSPG_ERWCH (P31585) General secretion pathway protein G precursor (Pectic|
           enzymes secretion protein outG)
          Length = 153

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 279 TVQQGAGAPNGKPPTKYRPKNHHQSGRRRRRPTE 178
           T +QG GA   KP T   P+N+ Q G  RR P +
Sbjct: 66  TTEQGLGALVKKPTTPPEPRNYPQDGYIRRLPQD 99



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>DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like protein)|
           (Fer-1-like protein 1)
          Length = 2083

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -2

Query: 276 VQQGAGAPNGKPPTKYRPKNH---HQSGRRRRRPTE*FEIASVERRSGSPLC*TSITGRQ 106
           + Q A    G P T  +P +H   H  G +R+R +        ++     +    I GRQ
Sbjct: 175 LDQSAAVGPGGPTTPRKPPSHPPPHYPGAKRKRSSAPPRKLLSDKPQDFQIRVQVIEGRQ 234

Query: 105 VPGVKLSPFSSV 70
           +PGV + P   V
Sbjct: 235 LPGVNIKPVVKV 246



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>DJLA_MANSM (Q65RA1) DnaJ-like protein djlA|
          Length = 288

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 254 QTANLQLNTVPRTTIKVEEEEEDLQNNLRSQVWSDGAARHCARLALQGGK 105
           QT    L  + +   +V EE+  L NNL SQ+  D A R  A+ A   GK
Sbjct: 59  QTTFAVLGHLSKAKGRVTEEDIQLANNLMSQMQLDVANRQLAQNAFNRGK 108



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>EDEM2_HUMAN (Q9BV94) ER degradation-enhancing alpha-mannosidase-like 2|
           precursor
          Length = 578

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 279 TVQQGAGAPNGKPPTKYRPKNHHQSGRRRRRPTE 178
           TV  G   P  +P T + P+NH Q+  R R+P +
Sbjct: 519 TVSSGPWEPPARPGTLFSPENHDQA--RERKPAK 550



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>DUS4_MOUSE (Q8BFV3) Dual specificity protein phosphatase 4 (EC 3.1.3.48) (EC|
           3.1.3.16)
          Length = 398

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 152 DGAARHCARLALQGGKCLV*NCRP 81
           +G+  H A   L GGKCL+ +CRP
Sbjct: 33  NGSGSHGALGLLSGGKCLLLDCRP 56



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>GH34_ORYSA (Q60EJ6) Probable indole-3-acetic acid-amido synthetase GH3.4 (EC|
           6.3.2.-) (Auxin-responsive GH3-like protein 4) (OsGH3-4)
          Length = 629

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 252 NGKPPTKYRPKNHHQSGRRRRRPTE*FEIASVERRSGSPLC*TSITGRQVPGV 94
           +GKP +++   +    G R+  PT   E+   ERRSG       +  RQVPG+
Sbjct: 103 SGKPVSEFLTSSGTSGGERKLMPTIEEEM---ERRSGLYSLLMPVMSRQVPGL 152



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>DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like protein)|
           (Fer-1-like protein 1)
          Length = 2080

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 267 GAGAPNGKPPTKYRPKNHHQSGRRRRRPTE*FEIASVERRSGSPLC*TSITGRQVPGVKL 88
           G GAP        RP  H+   +R+R      ++ S ++     +    I GRQ+PGV +
Sbjct: 179 GPGAPTTPRKLPSRPPPHYPGIKRKRSAPTSRKLLS-DKPQDFQIRVQVIEGRQLPGVNI 237

Query: 87  SPFSSV 70
            P   V
Sbjct: 238 KPVVKV 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,168,750
Number of Sequences: 219361
Number of extensions: 621053
Number of successful extensions: 2027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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