Clone Name | rbastl45a08 |
---|---|
Clone Library Name | barley_pub |
>GSPG_ERWCH (P31585) General secretion pathway protein G precursor (Pectic| enzymes secretion protein outG) Length = 153 Score = 30.8 bits (68), Expect = 0.93 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -2 Query: 279 TVQQGAGAPNGKPPTKYRPKNHHQSGRRRRRPTE 178 T +QG GA KP T P+N+ Q G RR P + Sbjct: 66 TTEQGLGALVKKPTTPPEPRNYPQDGYIRRLPQD 99
>DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like protein)| (Fer-1-like protein 1) Length = 2083 Score = 30.0 bits (66), Expect = 1.6 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Frame = -2 Query: 276 VQQGAGAPNGKPPTKYRPKNH---HQSGRRRRRPTE*FEIASVERRSGSPLC*TSITGRQ 106 + Q A G P T +P +H H G +R+R + ++ + I GRQ Sbjct: 175 LDQSAAVGPGGPTTPRKPPSHPPPHYPGAKRKRSSAPPRKLLSDKPQDFQIRVQVIEGRQ 234 Query: 105 VPGVKLSPFSSV 70 +PGV + P V Sbjct: 235 LPGVNIKPVVKV 246
>DJLA_MANSM (Q65RA1) DnaJ-like protein djlA| Length = 288 Score = 29.6 bits (65), Expect = 2.1 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = -3 Query: 254 QTANLQLNTVPRTTIKVEEEEEDLQNNLRSQVWSDGAARHCARLALQGGK 105 QT L + + +V EE+ L NNL SQ+ D A R A+ A GK Sbjct: 59 QTTFAVLGHLSKAKGRVTEEDIQLANNLMSQMQLDVANRQLAQNAFNRGK 108
>EDEM2_HUMAN (Q9BV94) ER degradation-enhancing alpha-mannosidase-like 2| precursor Length = 578 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 279 TVQQGAGAPNGKPPTKYRPKNHHQSGRRRRRPTE 178 TV G P +P T + P+NH Q+ R R+P + Sbjct: 519 TVSSGPWEPPARPGTLFSPENHDQA--RERKPAK 550
>DUS4_MOUSE (Q8BFV3) Dual specificity protein phosphatase 4 (EC 3.1.3.48) (EC| 3.1.3.16) Length = 398 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 152 DGAARHCARLALQGGKCLV*NCRP 81 +G+ H A L GGKCL+ +CRP Sbjct: 33 NGSGSHGALGLLSGGKCLLLDCRP 56
>GH34_ORYSA (Q60EJ6) Probable indole-3-acetic acid-amido synthetase GH3.4 (EC| 6.3.2.-) (Auxin-responsive GH3-like protein 4) (OsGH3-4) Length = 629 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -2 Query: 252 NGKPPTKYRPKNHHQSGRRRRRPTE*FEIASVERRSGSPLC*TSITGRQVPGV 94 +GKP +++ + G R+ PT E+ ERRSG + RQVPG+ Sbjct: 103 SGKPVSEFLTSSGTSGGERKLMPTIEEEM---ERRSGLYSLLMPVMSRQVPGL 152
>DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like protein)| (Fer-1-like protein 1) Length = 2080 Score = 27.7 bits (60), Expect = 7.9 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -2 Query: 267 GAGAPNGKPPTKYRPKNHHQSGRRRRRPTE*FEIASVERRSGSPLC*TSITGRQVPGVKL 88 G GAP RP H+ +R+R ++ S ++ + I GRQ+PGV + Sbjct: 179 GPGAPTTPRKLPSRPPPHYPGIKRKRSAPTSRKLLS-DKPQDFQIRVQVIEGRQLPGVNI 237 Query: 87 SPFSSV 70 P V Sbjct: 238 KPVVKV 243 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,168,750 Number of Sequences: 219361 Number of extensions: 621053 Number of successful extensions: 2027 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1985 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2026 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)